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Majander, K.; Pfrengle, S.; Kocher, A.; Neukamm, J.; du Plessis, L.; Pla-Díaz, M.; Arora, N.; Akgül, G.; Salo, K.; Schats, R. et al.; Inskip, S.; Oinonen, M.; Valk, H.; Malve, M.; Kriiska, A.; Onkamo, P.; González-Candelas, F.; Kühnert, D.; Krause, J.; Schuenemann, V. J.: Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology 30, 2020.07.058, S. 1 - 16 (2020)

Barquera, R.; Lamnidis, T. C.; Lankapalli, A. K.; Kocher, A.; Hernández-Zaragoza, D. I.; Nelson, E. A.; Zamora-Herrera, A. C.; Perez Ramallo, P.; Bernal-Felipe, N.; Immel, A. et al.; Bos, K.; Acuña-Alonzo, V.; Barbieri, C.; Roberts, P.; Herbig, A.; Kühnert, D.; Márquez-Morfín, L.; Krause, J.: Origin and health status of first-generation Africans from early colonial Mexico. Current Biology 30 (11), 2020.04.002, S. 2078 - 2091.e11 (2020)

Hufsky, F.; Lamkiewicz, K.; Almeida, A.; Aouacheria, A.; Arighi, C.; Bateman, A.; Baumbach, J.; Beerenwinkel, N.; Brandt, C.; Cacciabue, M. et al.; Chuguransky, S.; Drechsel, O.; Finn, R. D.; Fritz, A.; Fuchs, S.; Hattab, G.; Hauschild, A.-C.; Heider, D.; Hoffmann, M.; Hölzer, M.; Hoops, S.; Kaderali, L.; Kalvari, I.; von Kleist, M.; Kmiecinski, R.; Kühnert, D.; Lasso, G.; Libin, P.; List, M.; Löchel, H. F.; Martin, M. J.; Martin, R.; Matschinske, J.; McHardy, A. C.; Mendes, P.; Mistry, J.; Navratil, V.; Nawrocki, E.; O'Toole, Á. N.; Palacios-Ontiveros, N.; Petrov, A. I.; Rangel-Piñeros, G.; Redaschi, N.; Reimering, S.; Reinert, K.; Reyes, A.; Richardson, L.; Robertson, D. L.; Sadegh, S.; Singer, J. B.; Theys, K.; Upton, C.; Welzel, M.; Williams, L.; Marz, M.: Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and Coronavirus research. Preprints.org, 0376.v1 (2020)

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Burgueño-Sosa, E. E.; Esquivel Gómez, L. R.; Rivadeneyra-Gutiérrez, E.; León-López, A. A.: Generalidades de la familia Filoviridae y el virus del Ébola: una actualización de sus implicaciones en la población humana. Revista Biomédica 31 (1), S. 58 - 68 (2020)

Bos, K. I.; Kühnert, D.; Herbig, A.; Esquivel Gomez, L. R.; Andrades Valtueña, A.; Barquera Lozano, R. J.; Giffin, K.; Lankapalli, A. K.; Nelson, E. A.; Sabin, S. et al.; Spyrou, M. A.; Krause, J.: Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 73 (1), S. 639 - 666 (2019)

Vasylyeva, T. I.; du Plessis, L.; Pineda-Peña, A. C.; Kühnert, D.; Lemey, P.; Vandamme, A.-M.; Gomes, P.; Camacho, R. J.; Pybus, O. G.; Abecasis, A. B. et al.; Faria, N. R.: Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology. The Journal of Infectious Diseases 220 (2), S. 233 - 243 (2019)

Bouckaert, R.; Vaughan, T. G.; Barido-Sottani, J.; Duchêne, S.; Fourment, M.; Gavryushkina, A.; Heled, J.; Jones, G.; Kühnert, D.; De Maio, N. et al.; Matschiner, M.; Mendes, F. K.; Müller, N. F.; Ogilvie, H. A.; du Plessis, L.; Popinga, A.; Rambaut, A.; Rasmussen, D.; Siveroni, I.; Suchard, M. A.; Wu, C.-H.; Xie, D.; Zhang, C.; Stadler, T.; Drummond, A. J.: BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology 15 (4), e1006650 (2019)

Sabin, S.; Herbig, A.; Vagene, A. J.; Ahlström, T.; Bozovic, G.; Arcini, C.; Kuehnert, D.; Bos, K. I.: A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era 21, 201 (2020) (2019)

Dengler Haunreiter, V.; Boumasmoud, M.; Häffner, N.; Wipfli, D.; Leimer, N.; Rachmühl, C.; Kühnert, D.; Achermann, Y.; Zbinden, R.; Benussi, S. et al.; Vulin, C.; Zinkernagel, A. S.: In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. Nature Communications 10, 1149 (2019)

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Vågene, Å. J.; Herbig, A.; Campana, M. G.; García, R.; M., N.; Warinner, C.; Sabin, S.; Spyrou, M. A.; Andrades Valtueña, A.; Huson, D. et al.; Tuross, N.; Bos, K. I.; Krause, J.: Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution 2 (3), S. 520 - 528 (2018)

Scerri, E. M. L.; Kühnert, D.; Blinkhorn, J.; Groucutt, H. S.; Roberts, P.; Nicoll, K.; Zerboni, A.; Orijemie, E. A.; Barton, H.; Candy, I. et al.; Goldstein, S. T.; Hawks, J.; Niang, K.; N’Dah, D.; Petraglia, M. D.; Vella, N. C.: Field-based sciences must transform in response to COVID-19, Nature Ecology & Evolution, (2020)

Scire, J.; Barido-Sottani, J.; Kühnert, D.; Vaughan, T. G.; Stadler, T.: Improved multi-type birth-death phylodynamic inference in BEAST 2, bioRxiv, (2020)

Bos, K. I.: TB’s Chinese travels, Nature Ecology & Evolution 2, S. 1842 - 1843 (2018)