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Unrooted non-binary tree-based phylogenetic networks. Discrete applied mathematics 2.
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Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and Coronavirus research. Briefings in Bioinformatics, bbaa232 (2020)
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Estimating molecular preservation of the intestinal microbiome via metagenomic analyses of latrine sediments from two medieval cities. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 4.
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30 (19), 2020.07.058, S. 3788 - 3803.e10 (2020)
Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology 5.
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30 (11), 2020.04.002, S. 2078 - 2091.e11 (2020)
Origin and health status of first-generation Africans from early colonial Mexico. Current Biology 6.
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4 (3), S. 324 - 333 (2020)
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 7.
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6 (1), veaa004, S. 1 - 12 (2020)
Pervasive and non-random recombination in near full-length HIV genomes from Uganda. Virus Evolution 8.
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31 (1), S. 58 - 68 (2020)
Generalidades de la familia Filoviridae y el virus del Ébola: una actualización de sus implicaciones en la población humana. Revista Biomédica 9.
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73 (1), S. 639 - 666 (2019)
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 10.
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220 (2), S. 233 - 243 (2019)
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology. The Journal of Infectious Diseases 11.
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15 (4), e1006650 (2019)
BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology 12.
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A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era 13.
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In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. Nature Communications 14.
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The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine 15.
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Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications 16.
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Neolithic and medieval virus genomes reveal complex evolution of Hepatitis B. eLife 17.
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Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution Sonstige (4)
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Molecular epidemiology of SARS-CoV-2: a regional to global perspective, medRxiv, (2021)
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Field-based sciences must transform in response to COVID-19, Nature Ecology & Evolution, (2020)
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Improved multi-type birth-death phylodynamic inference in BEAST 2, bioRxiv, (2020)