Publications
Journal Article (29)
1.
Journal Article
119 (17), e2116722119, pp. 1 - 11 (2022)
Stone Age Yersinia pestis genomes shed light on the early evolution, diversity, and ecology of plague. Proceedings of the National Academy of Sciences of the United States of America 2.
Journal Article
13 (1), 1195 (2022)
Geographically dispersed zoonotic tuberculosis in pre-contact South American human populations. Nature Communications 3.
Journal Article
13, 821006 (2022)
Molecular epidemiology and transmission dynamics of the HIV-1 epidemic in Ethiopia: epidemic decline coincided with behavioral interventions before ART scale-up. Frontiers in Microbiology 4.
Journal Article
Biodiversity and vector-borne diseases: host dilution and vector amplification occur simultaneously for Amazonian leishmaniases. Molecular Ecology, 16341 (2022)
5.
Journal Article
374 (6564), abi5658, pp. 182 - 188 (2021)
Ten millennia of hepatitis B virus evolution. Science 6.
Journal Article
Bayesian phylogenetic analysis of linguistic data using BEAST. Journal of Language Evolution, lzab005 (2021)
7.
Journal Article
93, 104916 (2021)
Ecology, evolution, and epidemiology of zoonotic and vector-borne infectious diseases in French Guiana: Transdisciplinarity does matter to tackle new emerging threats. Infection, Genetics and Evolution 8.
Journal Article
36 (9), 2021.04.013, pp. 837 - 847 (2021)
What can phylodynamics bring to animal health research? Trends in Ecology and Evolution 9.
Journal Article
36, 100471 (2021)
Quantifying transmission fitness costs of multi-drug resistant tuberculosis. Epidemics 10.
Journal Article
294, 2021.01.005, pp. 10 - 30 (2021)
Unrooted non-binary tree-based phylogenetic networks. Discrete applied mathematics 11.
Journal Article
22 (2), bbaa232, pp. 642 - 663 (2021)
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and Coronavirus research. Briefings in Bioinformatics 12.
Journal Article
12 (1), 6009 (2021)
Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020. Nature Communications 13.
Journal Article
375 (1812), 20190576, pp. 1 - 15 (2020)
Estimating molecular preservation of the intestinal microbiome via metagenomic analyses of latrine sediments from two medieval cities. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 14.
Journal Article
Field-based sciences must transform in response to COVID-19. Nature Ecology & Evolution, s41559-020-01317-8 (2020)
15.
Journal Article
30 (19), 2020.07.058, pp. 3788 - 3803.e10 (2020)
Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology 16.
Journal Article
30 (11), 2020.04.002, pp. 2078 - 2091.e11 (2020)
Origin and health status of first-generation Africans from early colonial Mexico. Current Biology 17.
Journal Article
4 (3), pp. 324 - 333 (2020)
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 18.
Journal Article
6 (1), veaa004, pp. 1 - 12 (2020)
Pervasive and non-random recombination in near full-length HIV genomes from Uganda. Virus Evolution 19.
Journal Article
31 (1), pp. 58 - 68 (2020)
Generalidades de la familia Filoviridae y el virus del Ébola: una actualización de sus implicaciones en la población humana. Revista Biomédica 20.
Journal Article
73 (1), pp. 639 - 666 (2019)
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology