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Key, F. M.; Posth, C.; Esquivel Gomez, L. R.; Hübler, R.; Spyrou, M. A.; Neumann, G. U.; Furtwängler, A.; Sabin, S.; Burri Promerová, M.; Wissgott, A. et al.; Lankapalli, A. K.; Vågene, Å. J.; Meyer, M.; Nagel, S.; Tukhbatova, R.; Khokhlov, A.; Chizhevsky, A.; Hansen, S.; Belinsky, A. B.; Kalmykov, A.; Kantorovich, A. R.; Maslov, V. E.; Stockhammer, P. W.; Vai, S.; Zavattaro, M.; Riga, A.; Caramelli, D.; Skeates, R.; Beckett, J.; Gradoli, M. G.; Steuri, N.; Hafner, A.; Ramstein, M.; Siebke, I.; Lösch, S.; Erdal, Y. S.; Alikhan, N.-F.; Zhou, Z.; Achtman, M.; Bos, K.; Reinhold, S.; Haak, W.; Kühnert, D.; Herbig, A.; Krause, J.: Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 4 (3), pp. 324 - 333 (2020)

Mann, A.; Sabin, S.; Ziesemer, K.; Vågene, Å. J.; Schroeder, H.; Ozga, A. T.; Sankaranarayanan, K.; Hofman, C. A.; Fellows Yates, J. A.; Salazar-García, D. C. et al.; Frohlich, B.; Aldenderfer, M.; Hoogland, M.; Read, C.; Milner, G. R.; Stone, A. C.; Lewis, C. M.; Krause, J.; Hofman, C.; Bos, K. I.; Warinner, C. G.: Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Scientific Reports 8 (1), 9822 (2018)

Vågene, Å. J.; Herbig, A.; Campana, M. G.; García, R.; M., N.; Warinner, C.; Sabin, S.; Spyrou, M. A.; Andrades Valtueña, A.; Huson, D. et al.; Tuross, N.; Bos, K. I.; Krause, J.: Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution 2 (3), pp. 520 - 528 (2018)

Bos, K. I.; Jaeger, G.; Schuenemann, V. J.; Vågene, Å. J.; Spyrou, M. A.; Herbig, A.; Nieselt, K.; Krause, J.: Parallel detection of ancient pathogens via array-based DNA capture. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 370 (1660), 20130375 (2015)

Vågene, Å. J.; Krause, J.; Bos, K. I.: Metagenomic analysis and mitochondrial genome reconstruction of the post-medieval individual from Moneen Cave. In: Archaeological excavations in Moneen Cave, the Burren, Co. Clare, pp. 49 - 52 (Ed. Dowd, M.). Archaeopress, Oxford (2016)

Honap, T. P.; Vågene, Å. J.; Herbig, A.; Buikstra, J. E.; Bos, K. I.; Krause, J.; Stone, A. C.: Genomic analyses of ancient Mycobacterium tuberculosis complex strains from the Americas. (2017)

Vågene, Å. J.: Genomic insights into pre- and post-contact human pathogens in the New World. Dissertation, 194 pp., Eberhard-Karls Universität, Tübingen (2018)