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Journal Article (36)

1.
Journal Article
Giffin, K.; Lankapalli, A. K.; Sabin, S.; Spyrou, M. A.; Posth, C.; Kozakaitė, J.; Friedrich, R.; Miliauskienė, Ž.; Jankauskas, R.; Herbig, A. et al.; Bos, K. I.: A treponemal genome from an historic plague victim supports a recent emergence of yaws and its presence in 15th century Europe. Scientific Reports 10 (1), 9499 (2020)
2.
Journal Article
Barquera, R.; Lamnidis, T. C.; Lankapalli, A. K.; Kocher, A.; Hernández-Zaragoza, D. I.; Nelson, E. A.; Zamora-Herrera, A. C.; Perez Ramallo, P.; Bernal-Felipe, N.; Immel, A. et al.; Bos, K.; Acuña-Alonzo, V.; Barbieri, C.; Roberts, P.; Herbig, A.; Kühnert, D.; Márquez-Morfín, L.; Krause, J.: Origin and health status of first-generation Africans from early colonial Mexico. Current Biology 30 (11), 2020.04.002, pp. 2078 - 2091.e11 (2020)
3.
Journal Article
Key, F. M.; Posth, C.; Esquivel Gomez, L. R.; Hübler, R.; Spyrou, M. A.; Neumann, G. U.; Furtwängler, A.; Sabin, S.; Burri Promerová, M.; Wissgott, A. et al.; Lankapalli, A. K.; Vågene, Å. J.; Meyer, M.; Nagel, S.; Tukhbatova, R.; Khokhlov, A.; Chizhevsky, A.; Hansen, S.; Belinsky, A. B.; Kalmykov, A.; Kantorovich, A. R.; Maslov, V. E.; Stockhammer, P. W.; Vai, S.; Zavattaro, M.; Riga, A.; Caramelli, D.; Skeates, R.; Beckett, J.; Gradoli, M. G.; Steuri, N.; Hafner, A.; Ramstein, M.; Siebke, I.; Lösch, S.; Erdal, Y. S.; Alikhan, N.-F.; Zhou, Z.; Achtman, M.; Bos, K.; Reinhold, S.; Haak, W.; Kühnert, D.; Herbig, A.; Krause, J.: Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 4 (3), pp. 324 - 333 (2020)
4.
Journal Article
Nelson, E. A.; Buikstra, J. E.; Herbig, A.; Tung, T. A.; Bos, K. I.: Advances in the molecular detection of tuberculosis in pre-contact Andean South America. International Journey of Paleopathology, 2019.12.006 (2020)
5.
Journal Article
Hübler, R.; Key, F. M.; Warinner, C. G.; Bos, K. I.; Krause, J.; Herbig, A.: HOPS: Automated detection and authentication of pathogen DNA in archaeological remains. Genome Biology 20 (n/a), 280 (2019) (2019)
6.
Journal Article
Spyrou, M. A.; Keller, M.; Tukhbatova, R. I.; Scheib, C. L.; Nelson, E. A.; Andrades Valtueña, A.; Neumann, G.; Walker, D.; Alterauge, A.; Carty, N. et al.; Cessford, C.; Fetz, H.; Gourvennec, M.; Hartle, R.; Henderson, M.; von Heyking, K.; Inskip, S. A.; Kacki, S.; Key, F. M.; Knox, E. L.; Later, C.; Maheshwari-Aplin, P.; Peters, J.; Robb, J. E.; Schreiber, J.; Kivisild, T.; Castex, D.; Lösch, S.; Harbeck, M.; Herbig, A.; Bos, K. I.; Krause, J.: Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes. Nature Communications 10 (1), 4470 (2019)
7.
Journal Article
Bos, K. I.; Kühnert, D.; Herbig, A.; Esquivel Gomez, L. R.; Andrades Valtueña, A.; Barquera Lozano, R. J.; Giffin, K.; Lankapalli, A. K.; Nelson, E. A.; Sabin, S. et al.; Spyrou, M. A.; Krause, J.: Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 73 (1), pp. 639 - 666 (2019)
8.
Journal Article
Keller, M.; Spyrou, M. A.; Scheib, C. L.; Neumann, G.; Kröpelin, A.; Haas-Gebhard, B.; Päffgen, B.; Haberstroh, J.; Lacomba, A. R.; Raynaud, C. et al.; Cessford, C.; Durand, R.; Stadler, P.; Nägele, K.; Bates, J. S.; Trautmann, B.; Inskip, S. A.; Peters, J.; Robb, J. E.; Kivisild, T.; Castex, D.; McCormick, M.; Bos, K. I.; Harbeck, M.; Herbig, A.; Krause, J.: Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541–750). Proceedings of the National Academy of Sciences of the United States of America 116 (25), pp. 12363 - 12372 (2019)
9.
Journal Article
Sabin, S.; Herbig, A.; Vagene, A. J.; Ahlström, T.; Bozovic, G.; Arcini, C.; Kuehnert, D.; Bos, K. I.: A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. bioRxiv (2019)
10.
Journal Article
Spyrou, M. A.; Bos, K. I.; Herbig, A.; Krause, J.: Ancient pathogen genomics as an emerging tool for infectious disease research. Nature Reviews Genetics 20, pp. 323 - 340 (2019)
11.
Journal Article
Bos, K. I.: TB’s Chinese travels. Nature Ecology & Evolution 2 (12), pp. 1842 - 1843 (2018)
12.
Journal Article
Knauf, S.; Gogarten, J. F.; Schuenemann, V. J.; Nys, D.; M., H.; Düx, A.; Strouhal, M.; Mikalová, L.; Bos, K. I.; Armstrong, R. et al.; Batamuzi, E. K.; Chuma, I. S.; Davoust, B.; Diatta, G.; Fyumagwa, R. D.; Kazwala, R. R.; Keyyu, J. D.; Lejora, I. A. V.; Levasseur, A.; Liu, H.; Mayhew, M. A.; Mediannikov, O.; Raoult, D.; Wittig, R. M.; Roos, C.; Leendertz, F. H.; Šmajs, D.; Nieselt, K.; Krause, J.; Calvignac-Spencer, S.: Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Emerging Microbes & Infections 7, 157 (2018)
13.
Journal Article
Mann, A.; Sabin, S.; Ziesemer, K.; Vågene, Å. J.; Schroeder, H.; Ozga, A. T.; Sankaranarayanan, K.; Hofman, C. A.; Fellows Yates, J. A.; Salazar-García, D. C. et al.; Frohlich, B.; Aldenderfer, M.; Hoogland, M.; Read, C.; Milner, G. R.; Stone, A. C.; Lewis, C. M.; Krause, J.; Hofman, C.; Bos, K. I.; Warinner, C. G.: Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Scientific Reports 8 (1), 9822 (2018)
14.
Journal Article
Schuenemann, V. J.; Lankapalli, A. K.; Barquera, R.; Nelson, E. A.; Iraíz Hernández, D.; Acuña Alonzo, V.; Bos, K. I.; Márquez Morfín, L.; Herbig, A.; Krause, J.: Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains. PLOS Neglected Tropical Diseases 12 (6), e0006447 (2018)
15.
Journal Article
Spyrou, M. A.; Tukhbatova, R. I.; Wang, C.-C.; Andrades Valtueña, A.; Lankapalli, A. K.; Kondrashin, V. V.; Tsybin, V. A.; Khokhlov, A.; Kühnert, D.; Herbig, A. et al.; Bos, K. I.; Krause, J.: Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications 9, 2234 (2018)
16.
Journal Article
Vågene, Å. J.; Herbig, A.; Campana, M. G.; García, R.; M., N.; Warinner, C.; Sabin, S.; Spyrou, M. A.; Andrades Valtueña, A.; Huson, D. et al.; Tuross, N.; Bos, K. I.; Krause, J.: Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution 2 (3), pp. 520 - 528 (2018)
17.
Journal Article
Spyrou, M. A.; Bos, K. I.: Tracking Ancient Plagues. Natural History 125 (9), pp. 18 - 20 (2017)
18.
Journal Article
Key, F. M.; Posth, C.; Krause, J.; Herbig, A.; Bos, K. I.: Mining metagenomic data sets for ancient DNA: Recommended protocols for authentication. Trends in Genetics 33 (8), pp. 508 - 520 (2017)
19.
Journal Article
Andrades Valtueña, A.; Mittnik, A.; Key, F. M.; Haak, W.; Allmäe, R.; Belinskij, A.; Daubaras, M.; Feldman, M.; Jankauskas, R.; Janković, I. et al.; Massy, K.; Novak, M.; Pfrengle, S.; Reinhold, S.; Šlaus, M.; Spyrou, M. A.; Szécsényi-Nagy, A.; Tõrv, M.; Hansen, S.; Bos, K. I.; Stockhammer, P. W.; Herbig, A.; Krause, J.: The Stone Age plague and its persistence in Eurasia. Current Biology 27 (23), pp. 3683 - 3691 (2017)
20.
Journal Article
Arora, N.; Schuenemann, V. J.; Jäger, G.; Peltzer, A.; Seitz, A.; Herbig, A.; Strouhal, M.; Grillová, L.; Sánchez-Busó, L.; Kühnert, D. et al.; Bos, K. I.; Davis, L. R.; Mikalová, L.; Bruisten, S.; Komericki, P.; French, P.; Grant, P. R.; Pando, M. A.; Vaulet, L. G.; Fermepin, M. R.; Martinez, A.; Centurion Lara, A.; Giacani, L.; Norris, S. J.; Šmajs, D.; Bosshard, P. P.; González-Candelas, F.; Nieselt, K.; Krause, J.; Bagheri, H. C.: Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology 2, 16245 (2016)
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