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Journal Article (17)

1.
Journal Article
Fagernäs, Z.; García-Collado, M. I.; Hendy, J.; Hofman, C. A.; Speller, C.; Velsko, I. M.; Warinner, C.: A unified protocol for simultaneous extraction of DNA and proteins from archaeological dental calculus. Journal of Archaeological Science 118, 105135 (2020)
2.
Journal Article
Skourtanioti, E.; Erdal, Y. S.; Frangipane, M.; Balossi Restelli, F.; Yener, K. A.; Pinnock, F.; Matthiae, P.; Özbal, R.; Schoop, U.-D.; Guliyev, F. et al.; Akhundov, T.; Lyonnet, B.; Hammer, E. L.; Nugent, S. E.; Burri, M.; Neumann, G. U.; Penske, S. E.; Ingman, T.; Akar, M.; Shafiq, R.; Palumbi, G.; Eisenmann, S.; D’Andrea, M.; Rohrlach, A. B.; Warinner, C.; Jeong, C.; Stockhammer, P. W.; Haak, W.; Krause, J.: Genomic history of Neolithic to Bronze Age Anatolia, Northern Levant, and Southern Caucasus. Cell 181 (5), pp. 1158 - 1175.e28 (2020)
3.
Journal Article
Borry, M.; Cordova, B.; Perri, A.; Wibowo, M.; Honap, T. P.; Ko, J.; Yu, J.; Britton, K.; Girdland-Flink, L.; Power, R. C. et al.; Stuijts, I.; Salazar-García, D. C.; Hofman, C.; Hagan, R.; Kagoné, T. S.; Meda, N.; Carabin, H.; Jacobson, D.; Reinhard, K.; Lewis, C.; Kostic, A.; Jeong, C.; Herbig, A.; Hübner, A.; Warinner, C.: CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. PeerJ, 8:e9001 (2020)
4.
Journal Article
Wilkin, S.; Ventresca Miller, A.; Taylor, W. T. T.; Miller, B. K.; Hagan, R.; Bleasdale, M.; Scott, A.; Gankhuyg, S.; Ramsøe, A.; Uliziibayar, S. et al.; Trachsel, C.; Nanni, P.; Grossmann, J.; Orlando, L.; Horton, M.; Stockhammer, P. W.; Myagmar, E.; Boivin, N.; Warinner, C.; Hendy, J.: Dairy pastoralism sustained eastern Eurasian steppe populations for 5,000 years. Nature Ecology & Evolution 4 (3), pp. 346 - 355 (2020)
5.
Journal Article
Hübler, R.; Key, F. M.; Warinner, C. G.; Bos, K. I.; Krause, J.; Herbig, A.: HOPS: Automated detection and authentication of pathogen DNA in archaeological remains. Genome Biology 20 (n/a), 280 (2019) (2019)
6.
Journal Article
Velsko, I. M.; Fellows Yates, J. A.; Aron, F.; Hagan, R.; Frantz, L. A. F.; Loe, L.; Martinez, J. B. R.; Chaves, E.; Gosden, C.; Larson, G. et al.; Warinner, C. G.: Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage. Microbiome 7 (1), 102 (2019)
7.
Journal Article
Hagan, R.; Hofman, C. A.; Hübner, A.; Reinhard, K.; Schnorr, S.; Lewis Jr, C. M.; Sankaranarayanan, K.; Warinner, C. G.: Comparison of extraction methods for recovering ancient microbial DNA from paleofeces. American Journal of Physical Anthropology n/a (n/a), ajpa.23978 (2019)
8.
Journal Article
Geber, J.; Tromp, M.; Scott, A.; Bouwman, A.; Nanni, P.; Grossmann, J.; Hendy, J.; Warinner, C. G.: Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine. Proceedings of the National Academy of Sciences of the United States of America 116 (39), pp. 19380 - 19385 (2019)
9.
Journal Article
Hernández-Hernández, O.; Hernández-Zaragoza, D. I.; Barquera, R.; Warinner, C. G.; López-Gil, C.; Arrieta-Bolaños, E.; Clayton, S.; Bravo-Acevedo, A.; la Cruz, F. d. R. R.-d.; Méndez-Mani, P. et al.; de Pavón-Vargas, M. l. Á.; Zúñiga, J.; Yunis, E. J.; Bekker-Méndez, C.; Granados, J.: Genetic diversity of HLA system in two populations from Oaxaca, Mexico: Oaxaca city and rural Oaxaca. Human Immunology (2019)
10.
Journal Article
Radini, A.; Tromp, M.; Beach, A. I.; Tong, E.; Speller, C.; McCormick, M.; Dudgeon, J. V.; Collins, M. J.; Rühli, F.; Kröger, R. et al.; Warinner, C. G.: Medieval women’s early involvement in manuscript production suggested by lapis lazuli identification in dental calculus. Science Advances 5 (1), eaau7126 (2019)
11.
Journal Article
Ziesemer, K. A.; Ramos-Madrigal, J.; Mann, A. E.; Brandt, B. W.; Sankaranarayanan, K.; Ozga, A. T.; Hoogland, M.; Hofman, C. A.; Salazar-García, D. C.; Frohlich, B. et al.; Milner, G. R.; Stone, A. C.; Aldenderfer, M.; Jr, L.; M., C.; Hofman, C. L.; Warinner, C. G.; Schroeder, H.: The efficacy of whole human genome capture on ancient dental calculus and dentin. American Journal of Physical Anthropology 168 (3), pp. 496 - 509 (2018)
12.
Journal Article
Jeong, C.; Wilkin, S.; Amgalantugs, T.; Bouwman, A. S.; Taylor, W. T. T.; Hagan, R.; Bromage, S.; Tsolmon, S.; Trachsel, C.; Grossmann, J. et al.; Littleton, J.; Makarewicz, C. A.; Krigbaum, J.; Burri Promerová, M.; Scott, A.; Davaasambuu, G.; Wright, J.; Irmer, F.; Myagmar, E.; Boivin, N. L.; Robbeets, M.; Rühli, F. J.; Krause, J.; Frohlich, B.; Hendy, J.; Warinner, C. G.: Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe. Proceedings of the National Academy of Sciences of the United States of America 115 (48), pp. E11248 - E11255 (2018)
13.
Journal Article
Hendy, J.; Warinner, C. G.; Bouwman, A.; Collins, M. J.; Fiddyment, S.; Fischer, R.; Hagan, R.; Hofman, C. A.; Holst, M.; Chaves, E. et al.; Klaus, L.; Larson, G.; Mackie, M.; McGrath, K.; Mundorff, A. Z.; Radini, A.; Rao, H.; Trachsel, C.; Velsko, I. M.; Speller, C. F.: Proteomic evidence of dietary sources in ancient dental calculus. Proceedings of the Royal Society B: Biological Sciences 285 (1883), 20180977 (2018)
14.
Journal Article
Velsko, I. M.; Frantz, L. A. F.; Herbig, A.; Larson, G.; Warinner, C.: Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research. mSystems 3 (4), e00080-18 (2018)
15.
Journal Article
Mann, A.; Sabin, S.; Ziesemer, K.; Vågene, Å. J.; Schroeder, H.; Ozga, A. T.; Sankaranarayanan, K.; Hofman, C. A.; Fellows Yates, J. A.; Salazar-García, D. C. et al.; Frohlich, B.; Aldenderfer, M.; Hoogland, M.; Read, C.; Milner, G. R.; Stone, A. C.; Lewis, C. M.; Krause, J.; Hofman, C.; Bos, K. I.; Warinner, C. G.: Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Scientific Reports 8 (1), 9822 (2018)
16.
Journal Article
Martínez Tuñón , A.; Robles García, N. M.; Clark, D. J.; Warinner, C. G.; Tuross, N.: Clandestine pulque production during the sixteenth-century in the Tlacolula Valley, Oaxaca, Mexico. Mexicon 40 (2), pp. 52 - 59 (2018)
17.
Journal Article
Vågene, Å. J.; Herbig, A.; Campana, M. G.; García, R.; M., N.; Warinner, C.; Sabin, S.; Spyrou, M. A.; Andrades Valtueña, A.; Huson, D. et al.; Tuross, N.; Bos, K. I.; Krause, J.: Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution 2 (3), pp. 520 - 528 (2018)

Thesis - PhD (1)

18.
Thesis - PhD
Sabin, S.: Insights into microbial evolution and ecology from genetic analysis of diverse archaeological materials. Dissertation, 172 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)

Working Paper (1)

19.
Working Paper
Lindo, J.; Haas, R.; Hofman, C.; Apata, M.; Moraga, M.; Verdugo, R.; Watson, J. T.; Llave, C.; Witonsky, D.; Pacheco, E. et al.; Villena, M.; Soria, R.; Beall, C.; Warinner, C. G.; Novembre, J.; Aldenderfer, M.; Di Rienzo, A.: The genetic prehistory of the Andean highlands 7,000 Years BP though European contact. bioRxiv (2018), 20 pp.
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