Publications of Aida Andrades Valtueña

Journal Article (10)

1.
Journal Article
Andrades Valtueña, A.; Neumann, G.; Spyrou, M. A.; Musralina, L.; Aron, F.; Beisenov, A.; Belinskiy, A. B.; Bos, K. I.; Buzhilova, A.; Conrad, M. et al.; Djansugurova, L. B.; Dobes, M.; Ernee, M.; Fernandez-Eraso, J.; Frohlich, B.; Furmanek, M.; Hałuszko, A.; Hansen, S.; Harney, E.; Hiss, A. N.; Hübner, A.; Key, F. M.; Khussainova, E.; Kitov, E.; Kitova, A. O.; Knipper, C.; Kühnert, D.; Lalueza-Fox, C.; Littleton, J.; Massy, K.; Mittnik, A.; Mujika-Alustiza, J. A.; Olalde, I.; Papac, L.; Penske, S. E.; Peska, J.; Pinhasi, R.; Reich, D.; Reinhold, S.; Stahl, R.; Stäuble, H.; Tukhbatova, R. I.; Vasilyev, S.; Veselovskaya, E.; Warinner, C.; Stockhammer, P. W.; Haak, W.; Krause, J.; Herbig, A.: Stone Age Yersinia pestis genomes shed light on the early evolution, diversity, and ecology of plague. Proceedings of the National Academy of Sciences of the United States of America 119 (17), e2116722119, pp. 1 - 11 (2022)
2.
Journal Article
Wu, X.; Ning, C.; Key, F. M.; Andrades Valtueña, A.; Lankapalli, A. K.; Gao, S.; Yang, X.; Zhang, F.; Liu, L.; Nie, Z. et al.; Ma, J.; Krause, J.; Herbig, A.; Cui, Y.: A 3,000-year-old, basal S. enterica lineage from Bronze Age Xinjiang suggests spread along the Proto-Silk Road. PLoS Pathogens 17 (9), 1009886, pp. 1 - 19 (2021)
3.
Journal Article
Fellows Yates, J. A.; Lamnidis, T. C.; Borry, M.; Andrades Valtueña, A.; Fagernäs, Z.; Clayton, S.; Garcia, M. U.; Neukamm, J.; Peltzer, A.: Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager. PeerJ, e10947 (2021)
4.
Journal Article
Fellows Yates, J. A.; Andrades Valtueña, A.; Vågene, A. J.; Cribdon, B.; Velsko, I. M.; Borry, M.; Bravo-López, M. J.; Fernandez-Guerra, A.; Green, E. J.; Ramachandran, S. L. et al.; Heintzman, P. D.; Spyrou, M. A.; Hübner, A.; Gancz, A. S.; Hider, J.; Allshouse, A. F.; Warinner, C.: Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data 8 (1), 31, pp. 1 - 8 (2021)
5.
Journal Article
Spyrou, M. A.; Keller, M.; Tukhbatova, R. I.; Scheib, C. L.; Nelson, E. A.; Andrades Valtueña, A.; Neumann, G.; Walker, D.; Alterauge, A.; Carty, N. et al.; Cessford, C.; Fetz, H.; Gourvennec, M.; Hartle, R.; Henderson, M.; von Heyking, K.; Inskip, S. A.; Kacki, S.; Key, F. M.; Knox, E. L.; Later, C.; Maheshwari-Aplin, P.; Peters, J.; Robb, J. E.; Schreiber, J.; Kivisild, T.; Castex, D.; Lösch, S.; Harbeck, M.; Herbig, A.; Bos, K. I.; Krause, J.: Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes. Nature Communications 10 (1), 4470 (2019)
6.
Journal Article
Bos, K. I.; Kühnert, D.; Herbig, A.; Esquivel Gomez, L. R.; Andrades Valtueña, A.; Barquera Lozano, R. J.; Giffin, K.; Lankapalli, A. K.; Nelson, E. A.; Sabin, S. et al.; Spyrou, M. A.; Krause, J.: Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 73 (1), pp. 639 - 666 (2019)
7.
Journal Article
Spyrou, M. A.; Tukhbatova, R. I.; Wang, C.-C.; Andrades Valtueña, A.; Lankapalli, A. K.; Kondrashin, V. V.; Tsybin, V. A.; Khokhlov, A.; Kühnert, D.; Herbig, A. et al.; Bos, K. I.; Krause, J.: Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications 9, 2234 (2018)
8.
Journal Article
Vågene, Å. J.; Herbig, A.; Campana, M. G.; García, R.; M., N.; Warinner, C.; Sabin, S.; Spyrou, M. A.; Andrades Valtueña, A.; Huson, D. et al.; Tuross, N.; Bos, K. I.; Krause, J.: Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution 2 (3), pp. 520 - 528 (2018)
9.
Journal Article
Mittnik, A.; Wang, C.-C.; Pfrengle, S.; Daubaras, M.; Zariņa, G.; Hallgren, F.; Allmäe, R.; Khartanovich, V.; Moiseyev, V.; Tõrv, M. et al.; Furtwängler, A.; Andrades Valtueña, A.; Feldman, M.; Economou, C.; Oinonen, M.; Vasks, A.; Balanovska, E.; Reich, D.; Jankauskas, R.; Haak, W.; Schiffels, S.; Krause, J.: The genetic prehistory of the Baltic Sea region. Nature Communications 9, 442 (2018)
10.
Journal Article
Andrades Valtueña, A.; Mittnik, A.; Key, F. M.; Haak, W.; Allmäe, R.; Belinskij, A.; Daubaras, M.; Feldman, M.; Jankauskas, R.; Janković, I. et al.; Massy, K.; Novak, M.; Pfrengle, S.; Reinhold, S.; Šlaus, M.; Spyrou, M. A.; Szécsényi-Nagy, A.; Tõrv, M.; Hansen, S.; Bos, K. I.; Stockhammer, P. W.; Herbig, A.; Krause, J.: The Stone Age plague and its persistence in Eurasia. Current Biology 27 (23), pp. 3683 - 3691 (2017)

Thesis - PhD (1)

11.
Thesis - PhD
Andrades Valtueña, A.: Beyond phylogenies: advancing analytical approaches for the field of ancient pathogenomics. Dissertation, 205 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften, Jena (2021)

Working Paper (1)

12.
Working Paper
Mittnik, A.; Wang, C.-C.; Pfrengle, S.; Daubaras, M.; Zariņa, G.; Hallgren, F.; Allmäe, R.; Khartanovich, V.; Moiseyev, V.; Furtwängler, A. et al.; Andrades Valtueña, A.; Feldman, M.; Economou, C.; Oinonen, M.; Vasks, A.; Tõrv, M.; Balanovsky, O.; Reich, D.; Jankauskas, R.; Haak, W.; Schiffels, S.; Krause, J.: The genetic history of Northern Europe. bioRxiv, 113241 (2017), 26 pp.
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