Publications of Denise Kühnert
All genres
Journal Article (21)
1.
Journal Article
14 (8), 1648 (2022)
Robust phylodynamic analysis of genetic sequencing data from structured populations. Viruses 2.
Journal Article
606 (7915), s41586-022-04800-3, pp. 718 - 724 (2022)
The source of the Black Death in fourteenth-century central Eurasia. Nature 3.
Journal Article
13, 821006 (2022)
Molecular epidemiology and transmission dynamics of the HIV-1 epidemic in Ethiopia: epidemic decline coincided with behavioral interventions before ART scale-up. Frontiers in Microbiology 4.
Journal Article
374 (6564), abi5658, pp. 182 - 188 (2021)
Ten millennia of hepatitis B virus evolution. Science 5.
Journal Article
Bayesian phylogenetic analysis of linguistic data using BEAST. Journal of Language Evolution, lzab005 (2021)
6.
Journal Article
36, 100471 (2021)
Quantifying transmission fitness costs of multi-drug resistant tuberculosis. Epidemics 7.
Journal Article
22 (2), bbaa232, pp. 642 - 663 (2021)
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and Coronavirus research. Briefings in Bioinformatics 8.
Journal Article
12 (1), 6009 (2021)
Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020. Nature Communications 9.
Journal Article
Field-based sciences must transform in response to COVID-19. Nature Ecology & Evolution, s41559-020-01317-8 (2020)
10.
Journal Article
30 (19), 2020.07.058, pp. 3788 - 3803.e10 (2020)
Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology 11.
Journal Article
30 (11), 2020.04.002, pp. 2078 - 2091.e11 (2020)
Origin and health status of first-generation Africans from early colonial Mexico. Current Biology 12.
Journal Article
4 (3), pp. 324 - 333 (2020)
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 13.
Journal Article
73 (1), pp. 639 - 666 (2019)
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 14.
Journal Article
220 (2), pp. 233 - 243 (2019)
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology. The Journal of Infectious Diseases 15.
Journal Article
15 (4), e1006650 (2019)
BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology 16.
Journal Article
21, 201 (2020) (2019)
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era 17.
Journal Article
10, 1149 (2019)
In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. Nature Communications 18.
Journal Article
25, pp. 47 - 53 (2018)
Tuberculosis outbreak investigation using phylodynamic analysis. Epidemics 19.
Journal Article
37, pp. 410 - 416 (2018)
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine 20.
Journal Article
9, 2234 (2018)
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications