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Journal Article (12)
2020
Journal Article
30 (19), 2020.07.058, pp. 3788 - 3803.e10 (2020)
Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology
Journal Article
30 (11), 2020.04.002, pp. 2078 - 2091.e11 (2020)
Origin and health status of first-generation Africans from early colonial Mexico. Current Biology
Journal Article
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and Coronavirus research. Preprints.org, 0376.v1 (2020)
Journal Article
4 (3), pp. 324 - 333 (2020)
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 2019
Journal Article
73 (1), pp. 639 - 666 (2019)
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology
Journal Article
220 (2), pp. 233 - 243 (2019)
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology. The Journal of Infectious Diseases
Journal Article
15 (4), e1006650 (2019)
BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology
Journal Article
21, 201 (2020) (2019)
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era
Journal Article
10, 1149 (2019)
In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. Nature Communications 2018
Journal Article
37, pp. 410 - 416 (2018)
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine
Journal Article
9, 2234 (2018)
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications
Journal Article
7, e36666 (2018)
Neolithic and medieval virus genomes reveal complex evolution of Hepatitis B. eLife Other (2)
2020
Other
Field-based sciences must transform in response to COVID-19, Nature Ecology & Evolution, (2020)
Other
Improved multi-type birth-death phylodynamic inference in BEAST 2, bioRxiv, (2020)