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Journal Article (48)
2020
Journal Article
69 (6), pp. 455 - 459 (2020)
Comparison of target enrichment strategies for ancient pathogen DNA. Biotechniques
Journal Article
18 (1), 108 (2020)
2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals. BMC Biology
Journal Article
10 (1), 9499 (2020)
A treponemal genome from an historic plague victim supports a recent emergence of yaws and its presence in 15th century Europe. Scientific Reports
Journal Article
30 (11), 2020.04.002, pp. 2078 - 2091.e11 (2020)
Origin and health status of first-generation Africans from early colonial Mexico. Current Biology
Journal Article
CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. PeerJ, 8:e9001 (2020)
Journal Article
4 (3), pp. 324 - 333 (2020)
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution
Journal Article
Advances in the molecular detection of tuberculosis in pre-contact Andean South America. International Journey of Paleopathology, 2019.12.006 (2020)
2019
Journal Article
20 (n/a), 280 (2019) (2019)
HOPS: Automated detection and authentication of pathogen DNA in archaeological remains. Genome Biology
Journal Article
10 (1), 4470 (2019)
Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes. Nature Communications
Journal Article
73 (1), pp. 639 - 666 (2019)
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology
Journal Article
116 (25), pp. 12363 - 12372 (2019)
Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541–750). Proceedings of the National Academy of Sciences of the United States of America
Journal Article
21, 201 (2020) (2019)
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era
Journal Article
20, pp. 323 - 340 (2019)
Ancient pathogen genomics as an emerging tool for infectious disease research. Nature Reviews Genetics 2018
Journal Article
3 (4), e00080-18 (2018)
Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research. mSystems
Journal Article
12 (6), e0006447 (2018)
Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains. PLOS Neglected Tropical Diseases
Journal Article
9, 2234 (2018)
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications
Journal Article
14 (5), pp. 1 - 17 (2018)
Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe. PLoS Pathogens
Journal Article
7, e36666 (2018)
Neolithic and medieval virus genomes reveal complex evolution of Hepatitis B. eLife
Journal Article
2 (3), pp. 520 - 528 (2018)
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution
Journal Article
14 (5), e1006997 (2018)
Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe. PLoS Pathogens