Publications of Denise Kühnert

Spyrou, M. A.; Tukhbatova, R. I.; Wang, C.-C.; Andrades Valtueña, A.; Lankapalli, A. K.; Kondrashin, V. V.; Tsybin, V. A.; Khokhlov, A.; Kühnert, D.; Herbig, A. et al.; Bos, K. I.; Krause, J.: Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications 9, 2234 (2018)

Krause-Kyora, B.; Susat, J.; Key, F. M.; Kühnert, D.; Bosse, E.; Immel, A.; Rinne, C.; Kornell, S.-C.; Yepes, D.; Franzenburg, S. et al.; Heyne, H. O.; Meier, T.; Lösch, S.; Meller, H.; Friederich, S.; Nicklisch, N.; Alt, K. W.; Schreiber, S.; Tholey, A.; Herbig, A.; Nebel, A.; Krause, J.: Neolithic and medieval virus genomes reveal complex evolution of Hepatitis B. eLife 7, e36666 (2018)

Lamkiewicz, K.; Gomez, L. R. E.; Kühnert, D.; Marz , M.: Genome structure, life cycle, and taxonomy of Coronaviruses and the evolution of SARS-CoV-2. In: Viral fitness and evolution: population dynamics and adaptive mechanisms, 9, 1 Ed., pp. 305 - 339 (Eds. Domingo, E.; Schuster, P.; Elena, S. F.; Perales, C.). Springer, Cham (2023)

Hufsky, F.; Abecasis, A.; Agudelo-Romero, P.; Bletsa, M.; Brown, K.; Claus, C.; Deinhardt-Emmer, S.; Deng, L.; Friedel, C. C.; Gismondi, M. I. et al.; Kostaki, E. G.; Kühnert, D.; Kulkarni-Kale, U.; Metzner, K. J.; Meyer, I. M.; Miozzi, L.; Nishimura, L.; Paraskevopoulou, S.; Pérez-Cataluña, A.; Rahlff, J.; Thomson, E.; Tumescheit, C.; van der Hoek, L.; Van Espen, L.; Vandamme, A.-M.; Zaheri, M.; Zuckerman, N.; Marz, M.: Women in the European Virus Bioinformatics Center, Viruses 14, (2022)

Severinov, D.; Yi, B.; Dalpke, A.; Rost, F.; Winkler, S.; Beil, J.; Reinhardt, S.; Klemroth, S.; Mehnert, G.; Hartkopf, F. et al.; Hölzer, M.; Kühnert, D.; German COVID-19 OMICS Initiative (DeCOI); Poetsch, A.: Potential novel SARS-CoV-2 variant of interest from lineage AP.1 with N501Y and additional spike mutations identified in Saxony, Germany, Virological, (2021)

Scire, J.; Barido-Sottani, J.; Kühnert, D.; Vaughan, T. G.; Stadler, T.: Improved multi-type birth-death phylodynamic inference in BEAST 2, bioRxiv, (2020)

Esquivel Gomez, L. R.; Savin, C.; Andrianaivoarimanana, V.; Rahajandraibe, S.; Randriantseheno, L. N.; Zhou, Z.; Kocher, A.; Didelot, X.; Rajerison, M.; Kühnert, D.: Phylogenetic analysis of the origin and spread of plague in Madagascar. (2023)

Brandt, C.; Spott, R.; Hölzer, M.; Kühnert, D.; Fuchs, S.; Lohde, M.; Marquet, M.; Viehweger, A.; Rimek, D.; Pletz, M. W.: Molecular epidemiology of SARS-CoV-2: a regional to global perspective. (2021)