Publications of Denise Kühnert
All genres
Journal Article (22)
2023
Journal Article
33 (8), 2023.02.041, pp. 1431 - 1447.e22 (2023)
Genomic analyses of hair from Ludwig van Beethoven. Current Biology 2022
Journal Article
14 (8), 1648 (2022)
Robust phylodynamic analysis of genetic sequencing data from structured populations. Viruses
Journal Article
606 (7915), s41586-022-04800-3, pp. 718 - 724 (2022)
The source of the Black Death in fourteenth-century central Eurasia. Nature
Journal Article
13, 821006 (2022)
Molecular epidemiology and transmission dynamics of the HIV-1 epidemic in Ethiopia: epidemic decline coincided with behavioral interventions before ART scale-up. Frontiers in Microbiology 2021
Journal Article
374 (6564), abi5658, pp. 182 - 188 (2021)
Ten millennia of hepatitis B virus evolution. Science
Journal Article
36, 100471, pp. 1 - 9 (2021)
Quantifying transmission fitness costs of multi-drug resistant tuberculosis. Epidemics
Journal Article
6 (2), lzab005, pp. 119 - 135 (2021)
Bayesian phylogenetic analysis of linguistic data using BEAST. Journal of Language Evolution
Journal Article
22 (2), bbaa232, pp. 642 - 663 (2021)
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and Coronavirus research. Briefings in Bioinformatics
Journal Article
12 (1), 6009 (2021)
Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020. Nature Communications 2020
Journal Article
Field-based sciences must transform in response to COVID-19. Nature Ecology & Evolution, s41559-020-01317-8 (2020)
Journal Article
30 (19), 2020.07.058, pp. 3788 - 3803.e10 (2020)
Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology
Journal Article
30 (11), 2020.04.002, pp. 2078 - 2091.e11 (2020)
Origin and health status of first-generation Africans from early colonial Mexico. Current Biology
Journal Article
4 (3), pp. 324 - 333 (2020)
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 2019
Journal Article
73 (1), pp. 639 - 666 (2019)
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology
Journal Article
220 (2), pp. 233 - 243 (2019)
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology. The Journal of Infectious Diseases
Journal Article
15 (4), e1006650 (2019)
BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology
Journal Article
21, 201 (2020) (2019)
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era
Journal Article
10, 1149 (2019)
In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. Nature Communications 2018
Journal Article
25, pp. 47 - 53 (2018)
Tuberculosis outbreak investigation using phylodynamic analysis. Epidemics
Journal Article
37, pp. 410 - 416 (2018)
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine