Publications

Specht, G.; Schmid, C.; Kühnert, D.; Kocher, A.: ggret: an R package for visualising and manipulating tree‑based phylogenetic networks. The Journal of Open Source Software (JOSS) 10 (110), 7773 (2025)

Kutanan, W.; Woravatin, W.; Srikummool, M.; Suwannapoom, C.; Hübner, A.; Kampuansai, J.; Khaokiew, C.; Schaschl, H.; Översti, S.; La, D. D. et al.; Arias, L.; Stoneking, M.: Maternal genetic origin of Chao Lay coastal maritime populations from Thailand. BMC Biology 23 (1), 146 (2025)

Esquivel Gomez, L. R.; Malysheva, N.; Pfeil, J.; Yang, Z.; Bütow, S. M.; Irrgang, C.; Körber, N.; Hattab, G.; Kühnert, D.; Ladewig, K.: Holistic forecasting for future pandemics: a review of pathogens, models, and data. Discover public health 22, 211 (2025)

Spott, R.; Pletz, M. W.; Fleischmann-Struzek, C.; Kimmig, A.; Hadlich, C.; Hauert, M.; Lohde, M.; Jundzill, M.; Marquet, M.; Dickmann, P. et al.; Schüchner, R.; Hölzer, M.; Kühnert, D.; Brandt, C.: Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance. eLife 13, RP94045 (2025)

Översti, S.; Weber, A.; Baran, V.; Kieninger, B.; Dilthey, A.; Houwaart, T.; Walker, A.; Schneider-Brachert, W.; Kühnert, D.: Evolutionary and epidemic dynamics of COVID-19 in Germany exemplified by three Bayesian phylodynamic case studies. Bioinformatics and biology insights 19, 11779322251321065 (2025)