Journal Article (36)
21.
Journal Article
Field-based sciences must transform in response to COVID-19. Nature Ecology & Evolution, s41559-020-01317-8 (2020)
22.
Journal Article
30 (19), 2020.07.058, pp. 3788 - 3803.e10 (2020)
Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology 23.
Journal Article
30 (11), 2020.04.002, pp. 2078 - 2091.e11 (2020)
Origin and health status of first-generation Africans from early colonial Mexico. Current Biology 24.
Journal Article
4 (3), pp. 324 - 333 (2020)
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution 25.
Journal Article
6 (1), veaa004, pp. 1 - 12 (2020)
Pervasive and non-random recombination in near full-length HIV genomes from Uganda. Virus Evolution 26.
Journal Article
31 (1), pp. 58 - 68 (2020)
Generalidades de la familia Filoviridae y el virus del Ébola: una actualización de sus implicaciones en la población humana. Revista Biomédica 27.
Journal Article
21, 201 (2020), pp. 1 - 24 (2020)
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era 28.
Journal Article
73 (1), pp. 639 - 666 (2019)
Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 29.
Journal Article
220 (2), pp. 233 - 243 (2019)
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology. The Journal of Infectious Diseases 30.
Journal Article
15 (4), e1006650 (2019)
BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology 31.
Journal Article
10, 1149 (2019)
In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance. Nature Communications 32.
Journal Article
25, pp. 47 - 53 (2018)
Tuberculosis outbreak investigation using phylodynamic analysis. Epidemics 33.
Journal Article
37, pp. 410 - 416 (2018)
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine 34.
Journal Article
9, 2234 (2018)
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications 35.
Journal Article
7, e36666 (2018)
Neolithic and medieval virus genomes reveal complex evolution of Hepatitis B. eLife 36.
Journal Article
2 (3), pp. 520 - 528 (2018)
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution Book Chapter (1)
37.
Book Chapter
Genome structure, life cycle, and taxonomy of Coronaviruses and the evolution of SARS-CoV-2. In: Viral fitness and evolution: population dynamics and adaptive mechanisms, 9, 1 Ed., pp. 305 - 339 (Eds. Domingo, E.; Schuster, P.; Elena, S. F.; Perales, C.). Springer, Cham (2023)
Other (3)
38.
Other
Women in the European Virus Bioinformatics Center, Viruses 14, (2022)
39.
Other
Potential novel SARS-CoV-2 variant of interest from lineage AP.1 with N501Y and additional spike mutations identified in Saxony, Germany, Virological, (2021)
40.
Other
TB’s Chinese travels, Nature Ecology & Evolution 2, pp. 1842 - 1843 (2018)