Publications of Denise Kühnert
All genres
Journal Article (30)
1.
Journal Article
22, 211 (2025)
Holistic forecasting for future pandemics: a review of pathogens, models, and data. Discover public health 2.
Journal Article
: Leveraging mobility data to analyze persistent SARS-CoV-2 mutations and inform targeted genomic surveillance. eLife 13, RP94045 (2025)
3.
Journal Article
19, 11779322251321065 (2025)
Evolutionary and epidemic dynamics of COVID-19 in Germany exemplified by three Bayesian phylodynamic case studies. Bioinformatics and biology insights 4.
Journal Article
15 (1), 5267 (2024)
Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses. Nature Communications 5.
Journal Article
14 (1), 541 (2024)
Recombination-aware phylogenetic analysis sheds light on the evolutionary origin of SARS-CoV-2. Scientific Reports 6.
Journal Article
9 (2), vead070 (2023)
Reconstructing relative transmission rates in Bayesian phylodynamics: two-fold transmission advantage of Omicron in Berlin, Germany during December 2021. Virus Evolution 7.
Journal Article
: Language trees with sampled ancestors support a hybrid model for the origin of Indo-European languages. Science 381 (6656), eabg0818, pp. 1 - 12 (2023)
8.
Journal Article
17 (5), e0010362 (2023)
Phylogenetic analysis of the origin and spread of plague in Madagascar. PLoS Neglected Tropical Diseases 9.
Journal Article
: Genomic analyses of hair from Ludwig van Beethoven. Current Biology 33 (8), 2023.02.041, pp. 1431 - 1447.e22 (2023)
10.
Journal Article
14 (8), 1648 (2022)
Robust phylodynamic analysis of genetic sequencing data from structured populations. Viruses 11.
Journal Article
: The source of the Black Death in fourteenth-century central Eurasia. Nature 606 (7915), s41586-022-04800-3, pp. 718 - 724 (2022)
12.
Journal Article
13, 821006 (2022)
Molecular epidemiology and transmission dynamics of the HIV-1 epidemic in Ethiopia: epidemic decline coincided with behavioral interventions before ART scale-up. Frontiers in Microbiology 13.
Journal Article
: Ten millennia of hepatitis B virus evolution. Science 374 (6564), abi5658, pp. 182 - 188 (2021)
14.
Journal Article
36, 100471, pp. 1 - 9 (2021)
Quantifying transmission fitness costs of multi-drug resistant tuberculosis. Epidemics 15.
Journal Article
6 (2), lzab005, pp. 119 - 135 (2021)
Bayesian phylogenetic analysis of linguistic data using BEAST. Journal of Language Evolution 16.
Journal Article
: Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and Coronavirus research. Briefings in Bioinformatics 22 (2), bbaa232, pp. 642 - 663 (2021)
17.
Journal Article
12 (1), 6009 (2021)
Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020. Nature Communications 18.
Journal Article
: Field-based sciences must transform in response to COVID-19. Nature Ecology & Evolution, s41559-020-01317-8 (2020)
19.
Journal Article
: Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology 30 (19), 2020.07.058, pp. 3788 - 3803.e10 (2020)
20.
Journal Article
: Origin and health status of first-generation Africans from early colonial Mexico. Current Biology 30 (11), 2020.04.002, pp. 2078 - 2091.e11 (2020)