Publications of Johannes Krause

Thesis - PhD (9)

201.
Thesis - PhD
Parker, C. E.: Advancements and optimization in ancient DNA protocols. Dissertation, 203 pp., Friedrich Schiller University Jena, Faculty of Biosciences, Jena (2022)
202.
Thesis - PhD
Fellows Yates, J. A.: Evolution of the human oral microbiome and resource development for ancient metagenomics. Dissertation, 142 pp., Friedrich Schiller University Jena, Faculty of Biosciences, Jena (2022)
203.
Thesis - PhD
Fagernäs, Z.: Advances in the study of ancient biomolecules in archaeological dental calculus. Dissertation, 167 pp., Friedrich Schiller University Jena, Faculty of Biosciences, Jena (2022)
204.
Thesis - PhD
Loosdrecht, M. S. v. d.: Archaeogenetic perspectives on the hunter-gatherers and prehistoric farmers of the Mediterranean. Dissertation, 265 pp., Friedrich Schiller University Jena, Faculty of Biological Sciences, Jena (2021)
205.
Thesis - PhD
Furtwängler, A.: Genomic insights into Late Neolithic and Early Bronze Age populations of modern-day Switzerland. Dissertation, 159 pp., Universität Tübingen, Mathematisch-Naturwissenschaftliche Fakultät [hosting institution], Tübingen (2020)
206.
Thesis - PhD
Keller, M.: Yersinia pestis genomes of the first and second plague pandemic recovered from ancient DNA. Dissertation, 271 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)
207.
Thesis - PhD
Feldman, M.: Tracing past human mobility and disease in western Eurasia by the genetic analysis of ancient human remains. Dissertation, 258 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)
208.
Thesis - PhD
Immel, A.: Applications of DNA capture in ancient DNA research. Dissertation, 258 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)
209.
Thesis - PhD
Sabin, S.: Insights into microbial evolution and ecology from genetic analysis of diverse archaeological materials. Dissertation, 172 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)

Working Paper (13)

210.
Working Paper
Loog, L.; Thalmann, O.; Sinding, M.-H. S.; Schuenemann, V. J.; Perri, A.; Germonpre, M.; Bocherens, H.; Witt, K. E.; Samaniego Castruita, J. A.; Velasco, M. S. et al.; Lundstrom, I. K. C.; Wales, N.; Sonet, G.; Frantz, L.; Schroeder, H.; Budd, J.; Jimenez, E.-L.; Fedorov, S.; Gasparyan, B.; Kandel, A. W.; Lazni{ˇ c}kova-Galetova, M.; Napierala, H.; Uerpmann, H.-P.; Nikolskiy, P. A.; Pavlova, E. Y.; Pitulko, V. V.; Herzig, K.-H.; Malhi, R. S.; Willerslev, E.; Hansen, A. J.; Dobney, K.; Gilbert, M. T. P.; Krause, J.; Larson, G.; Eriksson, A.; Manica, A.: Modern wolves trace their origin to a late Pleistocene expansion from Beringia. bioRxiv, 370122 (2018), 29 pp.
211.
Working Paper
Jeong, C.; Balanovsky, O.; Lukianova, E.; Kahbatkyzy, N.; Flegontov, P.; Zaporozhchenko, V.; Immel, A.; Wang, C.-C.; Ixan, O.; Khussainova, E. et al.; Bekmanov, B.; Zaibert, V.; Lavryashina, M.; Pocheshkhova, E.; Yusupov, Y.; Agdzhoyan, A.; Sergey, K.; Bukin, A.; Nymadawa, P.; Churnosov, M.; Skhalyakho, R.; Daragan, D.; Bogunov, Y.; Bogunova, A.; Shtrunov, A.; Dubova, N.; Zhabagin, M.; Yepiskoposyan, L.; Churakov, V.; Pislegin, N.; Damba, L.; Saroyants, L.; Dibirova, K.; Artamentova, L.; Utevska, O.; Idrisov, E.; Kamenshchikova, E.; Evseeva, I.; Metspalu, M.; Robbeets, M.; Djansugurova, L.; Balanovska, E.; Schiffels, S.; Haak, W.; Reich, D.; Krause, J.: Characterizing the genetic history of admixture across inner Eurasia. bioRxiv, 327122 (2018)
212.
Working Paper
Wang, C.-C.; Reinhold, S. R.; Kalmykov, A.; Wissgott, A.; Brandt, G.; Jeong, C.; Cheronet, O.; Ferry, M.; Harney, E.; Keating, D. et al.; Mallick, S.; Rohland, N.; Stewardson, K.; Kantorovich, A. R.; Maslov, V. E.; Petrenko, V. G.; Erlikh, V. R.; Atabiev, B. C.; Magomedov, R. G.; Kohl, P. L.; Alt, K. W.; Pichler, S. L.; Gerling, C.; Meller, H.; Vardanyan, B.; Yeganyan, L.; Rezepkin, A. D.; Mariaschk, D.; Berezina, N. Y.; Gresky, J.; Fuchs, K.; Knipper, C.; Schiffels, S.; Balanovska, E.; Balanovsky, O.; Mathieson, I.; Higham, T.; Berezin, Y. B.; Buzhilova, A. P.; Trifonov, V.; Pinhasi, R.; Belinskiy, A. B.; Reich, D.; Hansen, S.; Krause, J.; Haak, W.: The genetic prehistory of the Greater Caucasus. bioRxiv, 322347 (2018), 30 pp.
213.
Working Paper
Lamnidis, T. C.; Majander, K.; Jeong, C.; Salmela, E.; Wessman, A.; Moiseyev, V.; Khartanovich, V.; Balanovsky, O.; Ongyerth, M.; Weihmann, A. et al.; Sajantila, A.; Kelso, J.; Pääbo, S.; Onkamo, P.; Haak, W.; Krause, J.; Schiffels, S.: Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe. bioRxiv, 285437 (2018), 25 pp.
214.
Working Paper
Amorim, C. E. G.; Vai, S.; Posth, C.; Modi, A.; Koncz, I.; Hakenbeck, S.; La Rocca, M. C.; Mende, B.; Bobo, D.; Pohl, W. et al.; Baricco, L. P.; Bedini, E.; Francalacci, P.; Giostra, C.; Vida, T.; Winger, D.; von Freeden, U.; Ghirotto, S.; Lari, M.; Barbujani, G.; Krause, J.; Caramelli, D.; Geary, P. J.; Veeramah, K. R.: Understanding 6th-Century Barbarian Social Organization and Migration through Paleogenomics. bioRxiv, 268250 (2018), 27 pp.
215.
Working Paper
Knauf, S.; Gogarten, J.; Schuenemann, V. J.; Nys, H. M. D.; Duex, A.; Strouhal, M.; Mikalova, L.; Bos, K. I.; Armstrong, R.; Batamuzi, E. K. et al.; Chuma, I. S.; Davoust, B.; Diatta, G.; Fyumagwa, R. D.; Kazwala, R. R.; Keyyu, J. D.; Lejora, I. A. V.; Levasseur, A.; Liu, H.; Mayhew, M. A.; Mediannikov, O.; Raoult, D.; Wittig, R. M.; Roos, C.; Leendertz, F. H.; Smajs, D.; Nieselt, K.; Krause, J.; Calvignac-Spencer, S.: African nonhuman primates are infected with the Yaws bacterium Treponema pallidum subsp. pertenue. bioRxiv, 135491 (2017), 9 pp.
216.
Working Paper
Mathieson, I.; Roodenberg, S. A.; Posth, C.; Szécsényi-Nagy, A.; Rohland, N.; Mallick, S.; Olalde, I.; Broomandkhoshbacht, N.; Cheronet, O.; Fernandes, D. et al.; Ferry, M.; Gamarra, B.; Fortes, G. G.; Haak, W.; Harney, E.; Krause-Kyora, B.; Kucukkalipci, I.; Michel, M.; Mittnik, A.; Nägele, K.; Novak, M.; Oppenheimer, J.; Patterson, N.; Pfrengle, S.; Sirak, K.; Stewardson, K.; Vai, S.; Alexandrov, S.; Alt, K. W.; Andreescu, R.; Antonović, D.; Ash, A.; Atanassova, N.; Bacvarov, K.; Gusztáv, M. B.; Bocherens, H.; Bolus, M.; Boroneanţ, A.; Boyadzhiev, Y.; Budnik, A.; Burmaz, J.; Chohadzhiev, S.; Conard, N. J.; Cottiaux, R.; Čuka, M.; Cupillard, C.; Drucker, D. G.; Elenski, N.; Francken, M.; Galabova, B.; Ganetovski, G.; Gely, B.; Hajdu, T.; Handzhyiska, V.; Harvati, K.; Higham, T.; Iliev, S.; Janković, I.; Karavanić, I.; Kennett, D. J.; Komšo, D.; Kozak, A.; Labuda, D.; Lari, M.; Lazar, C.; Leppek, M.; Leshtakov, K.; Vetro, D. L.; Los, D.; Lozanov, I.; Malina, M.; Martini, F.; McSweeney, K.; Meller, H.; Menđušić, M.; Mirea, P.; Moiseyev, V.; Petrova, V.; Price, T. D.; Simalcsik, A.; Sineo, L.; Šlaus, M.; Slavchev, V.; Stanev, P.; Starović, A.; Szeniczey, T.; Talamo, S.; Teschler-Nicola, M.; Thevenet, C.; Valchev, I.; Valentin, F.; Vasilyev, S.; Veljanovska, F.; Venelinova, S.; Veselovskaya, E.; Viola, B.; Virag, C.; Zaninović, J.; Zäuner, S.; Stockhammer, P. W.; Catalano, G.; Krauß, R.; Caramelli, D.; Zariņa, G.; Gaydarska, B.; Lillie, M.; Nikitin, A. G.; Potekhina, I.; Papathanasiou, A.; Borić, D.; Bonsall, C.; Krause, J.; Pinhasi, R.; Reich, D.: The genomic history of Southeastern Europe. bioRxiv, 135616 (2017), 30 pp.
217.
Working Paper
Olalde, I.; Brace, S.; Allentoft, M. E.; Armit, I.; Kristiansen, K.; Rohland, N.; Mallick, S.; Booth, T.; Szécsényi-Nagy, A.; Mittnik, A. et al.; Altena, E.; Lipson, M.; Lazaridis, I.; Patterson, N. J.; Broomandkhoshbacht, N.; Diekmann, Y.; Faltyskova, Z.; Fernandes, D. M.; Ferry, M.; Harney, E.; de Knijff, P.; Michel, M.; Oppenheimer, J.; Stewardson, K.; Barclay, A.; Alt, K. W.; Fernández, A. A.; Bánffy, E.; Bernabò-Brea, M.; Billoin, D.; Blasco, C.; Bonsall, C.; Bonsall, L.; Allen, T.; Büster, L.; Carver, S.; Navarro, L. C.; Craig, O. E.; Cook, G. T.; Cunliffe, B.; Denaire, A.; Dinwiddy, K. E.; Dodwell, N.; Ernée, M.; Evans, C.; Kuchařík, M.; Farré, J. F.; Fokkens, H.; Fowler, C.; Gazenbeek, M.; Pena, R. G.; Haber-Uriarte, M.; Haduch, E.; Hey, G.; Jowett, N.; Knowles, T.; Massy, K.; Pfrengle, S.; Lefranc, P.; Lemercier, O.; Lefebvre, A.; Maurandi, J. L.; Majó, T.; McKinley, J. I.; McSweeney, K.; Gusztáv, M. B.; Modi, A.; Kulcsár, G.; Kiss, V.; Czene, A.; Patay, R.; Endródi, A.; Köhler, K.; Hajdu, T.; Cardoso, J. L.; Liesau, C.; Pearson, M. P.; Włodarczak, P.; Price, T. D.; Prieto, P.; Rey, P.-J.; Ríos, P.; Risch, R.; Guerra, M. A. R.; Schmitt, A.; Serralongue, J.; Silva, A. M.; Smrčka, V.; Vergnaud, L.; Zilhão, J.; Caramelli, D.; Higham, T.; Heyd, V.; Sheridan, A.; Sjögren, K.-G.; Thomas, M. G.; Stockhammer, P. W.; Pinhasi, R.; Krause, J.; Haak, W.; Barnes, I.; Lalueza-Fox, C.; Reich, D.: The Beaker Phenomenon and the genomic transformation of Northwest Europe. bioRxiv, 135962 (2017), 28 pp.
218.
Working Paper
Herbig, A.; Maixner, F.; Bos, K. I.; Zink, A.; Krause, J.; Huson, D. H.: MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman. bioRxiv, 050559 (2017), 16 pp.
219.
Working Paper
Mittnik, A.; Wang, C.-C.; Pfrengle, S.; Daubaras, M.; Zariņa, G.; Hallgren, F.; Allmäe, R.; Khartanovich, V.; Moiseyev, V.; Furtwängler, A. et al.; Andrades Valtueña, A.; Feldman, M.; Economou, C.; Oinonen, M.; Vasks, A.; Tõrv, M.; Balanovsky, O.; Reich, D.; Jankauskas, R.; Haak, W.; Schiffels, S.; Krause, J.: The genetic history of Northern Europe. bioRxiv, 113241 (2017), 26 pp.
220.
Working Paper
Gokhman, D.; Agranat-Tamir, L.; Housman, G.; Nissim-Rafinia, M.; Nieves-Colón, M.; Gu, H.; Ferrando-Bernal, M.; Gelabert, P.; Lipende, I.; Quillen, E. E. et al.; Meissner, A.; Stone, A. C.; Pusey, A. E.; Mjungu, D.; Kandel, L.; Liebergall, M.; Prada, M. E.; Vidal, J. M.; Krause, J.; Yakir, B.; Pääbo, S.; Reich, D.; Lalueza-Fox, C.; Marques-Bonet, T.; Meshorer, E.; Carmel, L.: Recent regulatory changes shaped human facial and vocal anatomy. bioRxiv, 106955 (2017), 24 pp.
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