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Journal Article (33)

  1. Journal Article
    Bos, K. I.; Kühnert, D.; Herbig, A.; Esquivel Gomez, L. R.; Andrades Valtueña, A.; Barquera Lozano, R. J.; Giffin, K.; Lankapalli, A. K.; Nelson, E. A.; Sabin, S. et al.; Spyrou, M. A.; Krause, J.: Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 73 (1), pp. 29.1 - 29.28 (2019)
  2. Journal Article
    Spyrou, M. A.; Keller, M.; Tukhbatova, R. I.; Scheib, C. L.; Nelson, E. A.; Andrades Valtueña, A.; Neumann, G.; Walker, D.; Alterauge, A.; Carty, N. et al.; Cessford, C.; Fetz, H.; Gourvennec, M.; Hartle, R.; Henderson, M.; von Heyking, K.; Inskip, S. A.; Kacki, S.; Key, F. M.; Knox, E. L.; Later, C.; Maheshwari-Aplin, P.; Peters, J.; Robb, J. E.; Schreiber, J.; Kivisild, T.; Castex, D.; Lösch, S.; Harbeck, M.; Herbig, A.; Bos, K. I.; Krause, J.: Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes. Nature Communications 10 (1) (2019)
  3. Journal Article
    Keller, M.; Spyrou, M. A.; Scheib, C. L.; Neumann, G.; Kröpelin, A.; Haas-Gebhard, B.; Päffgen, B.; Haberstroh, J.; Lacomba, A. R.; Raynaud, C. et al.; Cessford, C.; Durand, R.; Stadler, P.; Nägele, K.; Bates, J. S.; Trautmann, B.; Inskip, S. A.; Peters, J.; Robb, J. E.; Kivisild, T.; Castex, D.; McCormick, M.; Bos, K. I.; Harbeck, M.; Herbig, A.; Krause, J.: Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541–750). Proceedings of the National Academy of Sciences of the United States of America 116 (25) (2019)
  4. Journal Article
    Sabin, S.; Herbig, A.; Vagene, A. J.; Ahlström, T.; Bozovic, G.; Arcini, C.; Kuehnert, D.; Bos, K. I.: A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. bioRxiv (2019)
  5. Journal Article
    Hübler, R.; Key, F. M.; Warinner, C. G.; Bos, K. I.; Krause, J.; Herbig, A.: HOPS: Automated detection and authentication of pathogen DNA in archaeological remains. bioRxiv (2019)
  6. Journal Article
    Spyrou, M. A.; Bos, K. I.; Herbig, A.; Krause, J.: Ancient pathogen genomics as an emerging tool for infectious disease research. Nature Reviews Genetics 20, pp. 323 - 340 (2019)
  7. Journal Article
    Spyrou, M. A.; Keller, M.; Tukhbatova, R. I.; Nelson, E. A.; Andrades Valtueña, A.; Walker, D.; Alterauge, A.; Carty, N.; Fetz, H.; Gourvennec, M. et al.; Hartle, R.; Henderson, M.; von Heyking, K.; Kacki, S.; Knox, E. L.; Later, C.; Peters, J.; Schreiber, J.; Castex, D.; Lösch, S.; Harbeck, M.; Herbig, A.; Bos, K. I.; Krause, J.: A phylogeography of the second plague pandemic revealed through the analysis of historical Y. pestis genomes. bioRxiv (2018)
  8. Journal Article
    Bos, K. I.: TB’s Chinese travels. Nature Ecology & Evolution 2 (12) (2018)
  9. Journal Article
    Knauf, S.; Gogarten, J. F.; Schuenemann, V. J.; Nys, D.; M., H.; Düx, A.; Strouhal, M.; Mikalová, L.; Bos, K. I.; Armstrong, R. et al.; Batamuzi, E. K.; Chuma, I. S.; Davoust, B.; Diatta, G.; Fyumagwa, R. D.; Kazwala, R. R.; Keyyu, J. D.; Lejora, I. A. V.; Levasseur, A.; Liu, H.; Mayhew, M. A.; Mediannikov, O.; Raoult, D.; Wittig, R. M.; Roos, C.; Leendertz, F. H.; Šmajs, D.; Nieselt, K.; Krause, J.; Calvignac-Spencer, S.: Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Emerging Microbes & Infections 7 (2018)
  10. Journal Article
    Mann, A.; Sabin, S.; Ziesemer, K.; Vågene, Å. J.; Schroeder, H.; Ozga, A. T.; Sankaranarayanan, K.; Hofman, C. A.; Fellows Yates, J. A.; Salazar-García, D. C. et al.; Frohlich, B.; Aldenderfer, M.; Hoogland, M.; Read, C.; Milner, G. R.; Stone, A. C.; Lewis, C. M.; Krause, J.; Hofman, C.; Bos, K. I.; Warinner, C. G.: Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Scientific Reports 8 (1) (2018)
  11. Journal Article
    Schuenemann, V. J.; Lankapalli, A. K.; Barquera, R.; Nelson, E. A.; Iraíz Hernández, D.; Acuña Alonzo, V.; Bos, K. I.; Márquez Morfín, L.; Herbig, A.; Krause, J.: Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains. PLOS Neglected Tropical Diseases 12 (6) (2018)
  12. Journal Article
    Spyrou, M. A.; Tukhbatova, R. I.; Wang, C.-C.; Andrades Valtueña, A.; Lankapalli, A. K.; Kondrashin, V. V.; Tsybin, V. A.; Khokhlov, A.; Kühnert, D.; Herbig, A. et al.; Bos, K. I.; Krause, J.: Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications 9 (2018)
  13. Journal Article
    Vågene, Å. J.; Herbig, A.; Campana, M. G.; García, R.; M., N.; Warinner, C.; Sabin, S.; Spyrou, M. A.; Andrades Valtueña, A.; Huson, D. et al.; Tuross, N.; Bos, K. I.; Krause, J.: Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution 2 (3), pp. 520 - 528 (2018)
  14. Journal Article
    Spyrou, M. A.; Bos, K. I.: Tracking Ancient Plagues. Natural History 125 (9), pp. 18 - 20 (2017)
  15. Journal Article
    Key, F. M.; Posth, C.; Krause, J.; Herbig, A.; Bos, K. I.: Mining metagenomic data sets for ancient DNA: Recommended protocols for authentication. Trends in Genetics 33 (8), pp. 508 - 520 (2017)
  16. Journal Article
    Andrades Valtueña, A.; Mittnik, A.; Key, F. M.; Haak, W.; Allmäe, R.; Belinskij, A.; Daubaras, M.; Feldman, M.; Jankauskas, R.; Janković, I. et al.; Massy, K.; Novak, M.; Pfrengle, S.; Reinhold, S.; Šlaus, M.; Spyrou, M. A.; Szécsényi-Nagy, A.; Tõrv, M.; Hansen, S.; Bos, K. I.; Stockhammer, P. W.; Herbig, A.; Krause, J.: The Stone Age plague and its persistence in Eurasia. Current Biology 27 (23), pp. 3683 - 3691 (2017)
  17. Journal Article
    Arora, N.; Schuenemann, V. J.; Jäger, G.; Peltzer, A.; Seitz, A.; Herbig, A.; Strouhal, M.; Grillová, L.; Sánchez-Busó, L.; Kühnert, D. et al.; Bos, K. I.; Davis, L. R.; Mikalová, L.; Bruisten, S.; Komericki, P.; French, P.; Grant, P. R.; Pando, M. A.; Vaulet, L. G.; Fermepin, M. R.; Martinez, A.; Centurion Lara, A.; Giacani, L.; Norris, S. J.; Šmajs, D.; Bosshard, P. P.; González-Candelas, F.; Nieselt, K.; Krause, J.; Bagheri, H. C.: Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology 2 (2016)
  18. Journal Article
    Feldman, M.; Harbeck, M.; Keller, M.; Spyrou, M. A.; Rott, A.; Trautmann, B.; Scholz, H. C.; Päffgen, B.; Peters, J.; McCormick, M. et al.; Bos, K. I.; Herbig, A.; Krause, J.: A high-coverage Yersinia pestis genome from a 6th-century Justinianic plague victim. Molecular Biology and Evolution 33 (11), pp. 2911 - 2923 (2016)
  19. Journal Article
    Immel, A.; Le Cabec, A.; Bonazzi, M.; Herbig, A.; Temming, H.; Schuenemann, V. J.; Bos, K. I.; Langbein, F.; Harvati, K.; Bridault, A. et al.; Pion, G.; Julien, M.-A.; Krotova, O.; Conard, N. J.; Münzel, S. C.; Drucker, D. G.; Viola, B.; Hublin, J.-J.; Tafforeau, P.; Krause, J.: Effect of X-ray irradiation on ancient DNA in sub-fossil bones: guidelines for safe X-ray imaging. Scientific Reports 6 (2016)
  20. Journal Article
    Bos, K.; Herbig, A.; Sahl, J.; Waglechner, N.; Fourment, M.; Forrest, S. A.; Klunk, J.; Schuenemann, V. J.; Poinar, D.; Kuch, M. et al.; Golding, G. B.; Dutour, O.; Keim, P.; Wagner, D. M.; Holmes, E. C.; Krause, J.; Poinar, H. N.: Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus. eLife 5 (2016)
 
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