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Noonan, J. P.; Hofreiter, M.; Smith, D.; Priest, J. R.; Rohland, N.; Rabeder, G.; Krause, J.; Detter, J. C.; Paabo, S.; Rubin, E. M.: Genomic sequencing of Pleistocene cave bears. Science 309 (5734), pp. 597 - 600 (2005)

Heissig, F.; Krause, J.; Bryk, J.; Khaitovich, P.; Enard, W.; Paabo, S.: Functional analysis of human and chimpanzee promoters. Genome Biology 6 (7), R57 (2005)

Paabo, S.; Poinar, H.; Serre, D.; Jaenicke-Despres, V.; Hebler, J.; Rohland, N.; Kuch, M.; Krause, J.; Vigilant, L.; Hofreiter, M.: Genetic analyses from ancient DNA. Annual Review of Genetics 38, pp. 645 - 679 (2004)

Krause, J.; Trappe, T.: Die Reise unserer Gene: Eine Geschichte über uns und unsere Vorfahren. Propyläen Verlag, Berlin (2019), 288 pp.

Belinskiy, A.B.; Hansen, S.; Haak, W.; Wang, C. C.; Reinhold, S.; Kalmykov, A.; Krause, J.; Berezina, N.; Buzhilova, A.; Knipper, C. et al.; Gerling, C.; Pichler, S.; Alt, K.W.; Erlikh, V.R.; Kantorovich, A.R.; Maslov, V.E.; Trifonov, V.A.; Rezepkin, A.D.; Atabiev, B.C.; Magomedov, R.G.; Kohl, P.: New approaches in Bioarcheology of the north caucasus: 5 years bioarccaucasus & genetic history of the caucasus ; first results, surprises and implications. In: Archaeological heritage of the Caucasus: Topical Problems of Study and Preservation; The XXXist Kurpnov's readings, pp. 165 - 166 (Eds. Institute of History, Archaeology and Ethnography Daghestan Federal Research Centre of the Russian Academy of Sciences; Agency for Protection of Cultural Heritage of the Republic of Daghestan; Research and Production Center for Tourism and Local History; Research and Production Center “DARS”). Makhachkala Publishing House, Mavraev (2020)

Ghalici, A.; Reinhold, S.; Magomedov, R.G.; Belinskiy, A.B.; Kalmykov, A.A.; Krause, J.; Berezina, N.Y.; Buzhilova, A.P.; Haak, W.; Hansen, S.: The genetics of Caucasus mountain dwellers: first results from Dagestan Bronze Age sites. In: Archaeological heritage of the Caucasus: Topical Problems of Study and Preservation; The XXXist Kurpnov's readings, pp. 167 - 168 (Eds. Institute of History, Archaeology and Ethnography Daghestan Federal Research Centre of the Russian Academy of Sciences; Agency for Protection of Cultural Heritage of the Republic of Daghestan; Research and Production Center for Tourism and Local History; Research and Production Center “DARS”). Makhachkala Publishing House, Mavraev (2020)

Krause, J.; Haak, W.: Neue Erkenntnisse zur genetischen Geschichte Europas. In: Migration und Integration von der Urgeschichte bis zum Mittelalter: 9. Mitteldeutscher Archäologentag vom 20.-22. Oktober 2016 in Halle (Saale), pp. 21 - 38 (Ed. Meller, H.). Landesamt für Denkmalpflege und Archäologie Sachsen-Anhalt, Landesmuseum für Vorgeschichte, Halle (Saale) (2017)

Massy, K.; Knipper, C.; Mittnik, A.; Kraus, S.; Pernicka, E.; Wittenborn, F.; Krause, J.; Stockhammer, P. W.: Patterns of transformation from the Final Neolithic to the Early Bronze Age: a case study from the Lech Valley South of Augsburg. In: Appropriating innovations: entangled knowledge in Eurasia, 5000‒1500 BCE, 20, pp. 241 - 261 (Eds. Maran, J.; Stockhammer, P. W.). Oxbow Books, Oxford (2017)

Vågene, Å. J.; Krause, J.; Bos, K. I.: Metagenomic analysis and mitochondrial genome reconstruction of the post-medieval individual from Moneen Cave. In: Archaeological excavations in Moneen Cave, the Burren, Co. Clare, pp. 49 - 52 (Ed. Dowd, M.). Archaeopress, Oxford (2016)

Stockhammer, P. W.; Massy, K.; Knipper, C.; Friedrich, R.; Kromer, B.; Lindauer, S.; Radosavljević, J.; Pernicka, E.; Krause, J.: Kontinuität und Wandel vom Endneolithikum zur frühen Bronzezeit in der Region Augsburg. In: 2200 BC - Ein Klimasturz als Ursache für den Zerfall der Alten Welt? 7. Mitteldeutscher Archäologentag vom 23. bis 26. Oktober 2014 in Halle (Saale), Vol. 12, 2, pp. 617 - 642 (Ed. Meller, H.) (2015)

Krause, J.: Ancient human migrations. In: Migration: [Österreichischer Wissenschaftstag 2011], pp. 45 - 64 (Eds. Neck, R.; Schmidinger, H.). Böhlau, Wien (2013)

Honap, T. P.; Vågene, Å. J.; Herbig, A.; Buikstra, J. E.; Bos, K. I.; Krause, J.; Stone, A. C.: Genomic analyses of ancient Mycobacterium tuberculosis complex strains from the Americas. (2017)

Furtwängler, A.: Genomic insights into Late Neolithic and Early Bronze Age populations of modern-day Switzerland. Dissertation, 159 pp., Universität Tübingen, Mathematisch-Naturwissenschaftliche Fakultät [hosting institution], Tübingen (2020)

Keller, M.: Yersinia pestis genomes of the first and second plague pandemic recovered from ancient DNA. Dissertation, 271 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)

Feldman, M.: Tracing past human mobility and disease in western Eurasia by the genetic analysis of ancient human remains. Dissertation, 258 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)

Immel, A.: Applications of DNA capture in ancient DNA research. Dissertation, 258 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)

Sabin, S.: Insights into microbial evolution and ecology from genetic analysis of diverse archaeological materials. Dissertation, 172 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften [hosting institution], Jena (2020)

Rohrlach, A. B.; Papac, L.; Childebayeva, A.; Rivollat, M.; Villalba-Mouco, V.; Neumann, G. U.; Penske, S. E.; Skourtanioti, E.; Loosdrecht, M. S. v. d.; Akar, M. et al.; Boyadzhiev, K.; Boyadzhiev, Y.; Deguilloux, M.-F.; Dobeš, M.; Erdal, Y. S.; Ernée, M.; Frangipane, M.; Furmanek, M.; Friederich, S.; Ghesquière, E.; Hałuszko, A.; Hansen, S.; Küßner, M.; Mannino, M.; Özbal, R.; Reinhold, S.; Rottier, S.; Salazar-García, D. C.; Soler Diaz, J.; Stockhammer, P. W.; Togores Muñoz, T. M.; Aslihan Yener, K.; Posth, C.; Krause, J.; Herbig, A.; Haak, W.: Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-Path Neolithic expansion to Western Europe. bioRxiv, 431761 (2021), 23 pp.

Loog, L.; Thalmann, O.; Sinding, M.-H. S.; Schuenemann, V. J.; Perri, A.; Germonpre, M.; Bocherens, H.; Witt, K. E.; Samaniego Castruita, J. A.; Velasco, M. S. et al.; Lundstrom, I. K. C.; Wales, N.; Sonet, G.; Frantz, L.; Schroeder, H.; Budd, J.; Jimenez, E.-L.; Fedorov, S.; Gasparyan, B.; Kandel, A. W.; Lazni{ˇ c}kova-Galetova, M.; Napierala, H.; Uerpmann, H.-P.; Nikolskiy, P. A.; Pavlova, E. Y.; Pitulko, V. V.; Herzig, K.-H.; Malhi, R. S.; Willerslev, E.; Hansen, A. J.; Dobney, K.; Gilbert, M. T. P.; Krause, J.; Larson, G.; Eriksson, A.; Manica, A.: Modern wolves trace their origin to a late Pleistocene expansion from Beringia. bioRxiv, 370122 (2018), 29 pp.

Jeong, C.; Balanovsky, O.; Lukianova, E.; Kahbatkyzy, N.; Flegontov, P.; Zaporozhchenko, V.; Immel, A.; Wang, C.-C.; Ixan, O.; Khussainova, E. et al.; Bekmanov, B.; Zaibert, V.; Lavryashina, M.; Pocheshkhova, E.; Yusupov, Y.; Agdzhoyan, A.; Sergey, K.; Bukin, A.; Nymadawa, P.; Churnosov, M.; Skhalyakho, R.; Daragan, D.; Bogunov, Y.; Bogunova, A.; Shtrunov, A.; Dubova, N.; Zhabagin, M.; Yepiskoposyan, L.; Churakov, V.; Pislegin, N.; Damba, L.; Saroyants, L.; Dibirova, K.; Artamentova, L.; Utevska, O.; Idrisov, E.; Kamenshchikova, E.; Evseeva, I.; Metspalu, M.; Robbeets, M.; Djansugurova, L.; Balanovska, E.; Schiffels, S.; Haak, W.; Reich, D.; Krause, J.: Characterizing the genetic history of admixture across inner Eurasia. bioRxiv, 327122 (2018)