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Journal Article (48)

Journal Article
Schuenemann, V. J.; Singh, P.; Mendum, T. A.; Krause-Kyora, B.; Jaeger, G.; Bos, K.; Herbig, A.; Economou, C.; Benjak, A.; Busso, P. et al.; Nebel, A.; Boldsen, J. L.; Kjellstrom, A.; Wu, H.; Stewart, G. R.; Taylor, G. M.; Bauer, P.; Lee, O. Y. -.; Wu, H. H. T.; Minnikin, D. E.; Besra, G. S.; Tucker, K.; Roffey, S.; Sow, S. O.; Cole, S. T.; Nieselt, K.; Krause, J.: Genome-wide comparison of medieval and modern Mycobacterium leprae. Science 341 (6142), pp. 179 - 183 (2013)
Journal Article
Dugar, G.; Herbig, A.; Foerstner, K. U.; Heidrich, N.; Reinhardt, R.; Nieselt, K.; Sharma, C. M.: High-resolution transcriptome maps reveal strain-specific regulatory features of multiple Campylobacter jejuni isolates. PLoS Genetics 9 (5), UNSP e1003495 (2013)
Journal Article
Schuster, C. F.; Park, J.-H.; Prax, M.; Herbig, A.; Nieselt, K.; Rosenstein, R.; Inouye, M.; Bertram, R.: Characterization of a mazEF toxin-antitoxin homologue from Staphylococcus equorum. Journal of Bacteriology (Washington, DC) 195 (1), pp. 115 - 125 (2013)
Journal Article
Herbig, A.; Jäger, G.; Nieselt, K.: GenomeRing: alignment visualization based on SuperGenome coordinates. Bioinformatics 28 (12), pp. 7 - 15 (2012)
Journal Article
Waldvogel, E.; Herbig, A.; Battke, F.; Amin, R.; Nentwich, M.; Nieselt, K.; Ellingsen, T. E.; Wentzel, A.; Hodgson, D. A.; Wohlleben, W. et al.; Mast, Y.: The P-II protein GlnK is a pleiotropic regulator for morphological differentiation and secondary metabolism in Streptomyces coelicolor. Applied Microbiology and Biotechnology 92 (6), pp. 1219 - 1236 (2011)
Journal Article
Battke, F.; Symons, S.; Herbig, A.; Nieselt, K.: GaggleBridge: collaborative data analysis. Bioinformatics 27 (18), pp. 2612 - 2613 (2011)
Journal Article
Herbig, A.; Nieselt, K.: nocoRNAc: Characterization of non-coding RNAs in prokaryotes. BMC Bioinformatics 12, 40 (2011)
Journal Article
Nieselt, K.; Battke, F.; Herbig, A.; Bruheim, P.; Wentzel, A.; Jakobsen, O. M.; Sletta, H.; Alam, M. T.; Merlo, M. E.; Moore, J. et al.; Omara, W. A. M.; Morrissey, E. R.; Juarez-Hermosillo, M. A.; Rodriguez-Garcia, A.; Nentwich, M.; Thomas, L.; Iqbal, M.; Legaie, R.; Gaze, W. H.; Challis, G. L.; Jansen, R. C.; Dijkhuizen, L.; Rand, D. A.; Wild, D. L.; Bonin, M.; Reuther, J.; Wohlleben, W.; Smith, M. C. M.; Burroughs, N. J.; Martin, J. F.; Hodgson, D. A.; Takano, E.; Breitling, R.; Ellingsen, T. E.; Wellington, E. M. H.: The dynamic architecture of the metabolic switch in Streptomyces coelicolor. BMC Genomics 11, 10 (2010)

Book Chapter (3)

Book Chapter
Nieselt, K.; Herbig, A.: Non-coding RNA, classification. In: Encyclopedia of systems biology, pp. 1532 - 1534 (Ed. Dubitzky, W.) (2013)
Book Chapter
Nieselt, K.; Herbig, A.: Non-coding RNA, prediction. In: Encyclopedia of systems biology, pp. 1534 - 1538 (Ed. Dubitzky, W.) (2013)
Book Chapter
Battke, F.; Herbig, A.; A Wentzel, A.; Jakobsen, O. M.; Bonin, M.; Hodgson, D. A.; Wohlleben, W.; Ellingsen, T. E.; Nieselt, K.: A technical platform for generating reproducible expression data from streptomyces coelicolor batch cultivations. In: Software Tools and Algorithms for Biological Systems, pp. 3 - 15 (Ed. Arabnia , H. R.). Springer, New York (2011)

Poster (1)

Honap, T. P.; Vågene, Å. J.; Herbig, A.; Buikstra, J. E.; Bos, K. I.; Krause, J.; Stone, A. C.: Genomic analyses of ancient Mycobacterium tuberculosis complex strains from the Americas. (2017)

Working Paper (4)

Working Paper
Rohrlach, A. B.; Papac, L.; Childebayeva, A.; Rivollat, M.; Villalba-Mouco, V.; Neumann, G. U.; Penske, S. E.; Skourtanioti, E.; Loosdrecht, M. S. v. d.; Akar, M. et al.; Boyadzhiev, K.; Boyadzhiev, Y.; Deguilloux, M.-F.; Dobeš, M.; Erdal, Y. S.; Ernée, M.; Frangipane, M.; Furmanek, M.; Friederich, S.; Ghesquière, E.; Hałuszko, A.; Hansen, S.; Küßner, M.; Mannino, M.; Özbal, R.; Reinhold, S.; Rottier, S.; Salazar-García, D. C.; Soler Diaz, J.; Stockhammer, P. W.; Togores Muñoz, T. M.; Aslihan Yener, K.; Posth, C.; Krause, J.; Herbig, A.; Haak, W.: Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-Path Neolithic expansion to Western Europe. bioRxiv, 431761 (2021), 23 pp.
Working Paper
Velsko, I. M.; Frantz, L. A. F.; Herbig, A.; Larson, G.; Warinner, C. G.: Selection of appropriate metagenome taxonomic classifiers for ancient microbiome research. bioRxiv, 260042 (2018), 41 pp.
Working Paper
Herbig, A.; Maixner, F.; Bos, K. I.; Zink, A.; Krause, J.; Huson, D. H.: MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman. bioRxiv, 050559 (2017), 16 pp.
Working Paper
Bauer, J. S.; Fillinger, S.; Förstner, K.; Herbig, A.; Jones, A. C.; Flinspach, K.; Sharma, C.; Gross, H.; Nieselt, K.; Apel, A. K.: dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome. RNA Biology 14 (11) pp. 1617 - 1626 (2017), 11 pp.
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