Publications A. Herbig

Journal Article (29)

  1. 1.
    Vågene, Å. J.; Herbig, A.; Campana, M. G.; García, N. M. R.; Warinner, C. G.; Spyrou, M. A.; Andrades Valtueña, A.; Huson, D.; Tuross, N.; Bos, K. I. et al.; Krause, J.: Salmonella enterica genomes from victims of a major 16th century epidemic in Mexico. Nature Ecology and Evolution (2018)
  2. 2.
    Fellows Yates, J. A.; Drucker, D. G.; Reiter, E.; Heumos, S.; Welker, F.; Münzel, S. C.; Wojtal, P.; Lázničková-Galetová, M.; Conard, N. J.; Herbig, A. et al.; Bocherens, H.; Krause, J.: Central European Woolly Mammoth population dynamics: Insights from Late Pleistocene Mitochondrial Genomes. Scientific Reports (2017)
  3. 3.
    Key, F. M.; Posth, C.; Krause, J.; Herbig, A.; Bos, K. I.: Mining metagenomic data sets for ancient DNA: Recommended protocols for authentication. Trends in Genetics 33 (8), pp. 508 - 520 (2017)
  4. 4.
    Warinner, C. G.; Herbig, A.; Mann, A.; Fellows Yates, J. A.; Weiß, C. L.; Burbano, H. A.; Orlando, L.; Krause, J.: A robust framework for microbial archaeology. Annual Review of Genomics and Human Genetics 18, pp. 321 - 356 (2017)
  5. 5.
    Andrades Valtueña, A.; Mittnik, A.; Key, F. M.; Haak, W.; Allmäe, R.; Belinskij, A.; Daubaras, M.; Feldman, M.; Jankauskas, R.; Janković, I. et al.; Massy, K.; Novak, M.; Pfrengle, S.; Reinhold, S.; Šlaus, M.; Spyrou, M. A.; Szécsényi-Nagy, A.; Tõrv, M.; Hansen, S.; Bos, K. I.; Stockhammer, P. W.; Herbig, A.; Krause, J.: The Stone Age plague and its persistence in Eurasia. Current Biology 27 (23), pp. 3683 - 3691.e8 (2017)
  6. 6.
    Arora, N.; Schuenemann, V. J.; Jäger, G.; Peltzer, A.; Seitz, A.; Herbig, A.; Strouhal, M.; Grillová, L.; Sánchez-Busó, L.; Kühnert, D. et al.; Bos, K. I.; Davis, L. R.; Mikalová, L.; Bruisten, S.; Komericki, P.; French, P.; Grant, P. R.; Pando, M. A.; Vaulet, L. G.; Fermepin, M. R.; Martinez, A.; Centurion Lara, A.; Giacani, L.; Norris, S. J.; Šmajs, D.; Bosshard, P. P.; González-Candelas, F.; Nieselt, K.; Krause, J.; Bagheri, H. C.: Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology (2016)
  7. 7.
    Feldman, M.; Harbeck, M.; Keller, M.; Spyrou, M. A.; Rott, A.; Trautmann, B.; Scholz, H. C.; Päffgen, B.; Peters, J.; McCormick, M. et al.; Bos, K. I.; Herbig, A.; Krause, J.: A high-coverage Yersinia pestis genome from a 6th-century Justinianic plague victim. Molecular Biology and Evolution 33 (11), pp. 2911 - 2923 (2016)
  8. 8.
    Immel, A.; Le Cabec, A.; Bonazzi, M.; Herbig, A.; Temming, H.; Schuenemann, V. J.; Bos, K. I.; Langbein, F.; Harvati, K.; Bridault, A. et al.; Pion, G.; Julien, M.-A.; Krotova, O.; Conard, N. J.; Münzel, S. C.; Drucker, D. G.; Viola, B.; Hublin, J.-J.; Tafforeau, P.; Krause, J.: Effect of X-ray irradiation on ancient DNA in sub-fossil bones: guidelines for safe X-ray imaging. Scientific Reports (2016)
  9. 9.
    Herbig, A.; Heid, R.; Schmalian, J.: Charge doping versus impurity scattering in chemically substituted iron pnictides. Physical Review B 94 (9), 094512 (2016)
  10. 10.
    Spyrou, M. A.; Tukhbatova, R. I.; Feldman, M.; Drath, J.; Kacki, S.; Heredia, J. B. d.; Arnold, S.; Sitdikov, A. G.; Castex, D.; Wahl, J. et al.; Gazimzyanov, I. R.; Nurgaliev, D. K.; Herbig, A.; Bos, K. I.; Krause, J.: Historical Y. pestis genomes reveal the European Black Death as the source of ancient and modern plague pandemics. Cell Host & Microbe 19 (6), pp. 874 - 881 (2016)
  11. 11.
    Bos, K.; Herbig, A.; Sahl, J.; Waglechner, N.; Fourment, M.; Forrest, S. A.; Klunk, J.; Schuenemann, V. J.; Poinar, D.; Kuch, M. et al.; Golding, G. B.; Dutour, O.; Keim, P.; Wagner, D. M.; Holmes, E. C.; Krause, J.; Poinar, H. N.: Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus. eLife (2016)
  12. 12.
    Maixner, F.; Krause-Kyora, B.; Turaev, D.; Herbig, A.; Hoopmann, M. R.; Hallows, J. L.; Kusebauch, U.; Vigl, E. E.; Malfertheiner, P.; Megraud, F. et al.; O’Sullivan, N.; Cipollini, G.; Coia, V.; Samadelli, M.; Engstrand, L.; Linz, B.; Moritz, R. L.; Grimm, R.; Krause, J.; Nebel, A.; Moodley, Y.; Rattei, T.; Zink, A.: The 5300-year-old Helicobacter pylori genome of the Iceman. Science 351 (6269), pp. 162 - 165 (2016)
  13. 13.
    Peltzer, A.; Jager, G.; Herbig, A.; Seitz, A.; Kniep, C.; Krause, J.; Nieselt, K.: EAGER: efficient ancient genome reconstruction. Genome Biology 17, 60 (2016)
  14. 14.
    Immel, A.; Drucker, D. G.; Bonazzi, M.; Jahnke, T. K.; Munzel, S. C.; Schuenemann, V. J.; Herbig, A.; Kind, C.-J.; Krause, J.: Mitochondrial genomes of giant deers suggest their late survival in Central Europe. Scientific Reports (2015)
  15. 15.
    Singh, P.; Benjak, A.; Schuenemann, V. J.; Herbig, A.; Avanzi, C.; Busso, P.; Nieselt, K.; Krause, J.; Vera-Cabrera, L.; Cole, S. T.: Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis. Proceedings of the National Academy of Sciences of the USA 112 (14), pp. 4459 - 4464 (2015)
  16. 16.
    Bos, K. I.; Jaeger, G.; Schuenemann, V. J.; Vagene, A. J.; Spyrou, M. A.; Herbig, A.; Nieselt, K.; Krause, J.: Parallel detection of ancient pathogens via array-based DNA capture. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 370 (1660), 20130375 (2015)
  17. 17.
    Mechler, L.; Herbig, A.; Paprotka, K.; Fraunholz, M.; Nieselt, K.; Bertram, R.: A novel point mutation promotes growth phase-dependent Daptomycin tolerance in Staphylococcus aureus. Antimicrobial Agents and Chemotherapy 59 (9), pp. 5366 - 5376 (2015)
  18. 18.
    Thomason, M. K.; Bischler, T.; Eisenbart, S. K.; Foerstner, K. U.; Zhang, A.; Herbig, A.; Nieselt, K.; Sharma, C. M.; Storz, G.: Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli. Journal of Bacteriology (Washington, DC) 197 (1), pp. 18 - 28 (2015)
  19. 19.
    Lechnera, S.; Praxa, M.; Lange, B.; Huber, C.; Eisenreich, W.; Herbig, A.; Nieselt, K.; Bertram, R.: Metabolic and transcriptional activities of Staphylococcus aureus challenged with high-doses of daptomycin. International Journal of Medical Microbiology 304 (8), pp. 931 - 940 (2014)
  20. 20.
    Schroeder, W.; Bernhardt, J.; Marincola, G.; Klein-Hitpass, L.; Herbig, A.; Krupp, G.; Nieselt, K.; Wolz, C.: Altering gene expression by aminocoumarins: the role of DNA supercoiling in Staphylococcus aureus. BMC Genomics (2014)
 
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